Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 4e-11 >seq1 Length=37323695 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/152 (74%), Gaps = 8/152 (5%) Strand=Plus/Plus Query 94166 TCACAAA-CTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCA 94224 ||||| | |||| | | ||| ||||| |||| ||||||||| |||||||| | | Sbjct 6394183 TCACATATCTTGGT-AGTGCAATAGATGCCAGATTGCACACAGCAGTTTCTGTTGGACTT 6394241 Query 94225 CTGTACTGGACAATT---TCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCT 94281 |||||| ||||| ||||| |||||||||||||| || ||| |||| | ||||| Sbjct 6394242 GTGTACT---CAATTACCTCAGTACACAAATTTGAAGATTTAATGGTGCCAAGATTTTGC 6394298 Query 94282 TGGTTAGACTTTCTATTGATGGTATCCTTAAA 94313 ||||| ||||||||| ||||||| ||| Sbjct 6394299 TGGTTGCTTTTTCTATTGCAAGTATCCTGAAA 6394330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578535331605