Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq1 95.1 2e-14 >seq4 Length=31929104 Score = 147 bits (162), Expect = 3e-30 Identities = 566/886 (64%), Gaps = 10/886 (1%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| || || ||| ||||| || || || | ||| ||||| ||||||||||| ||| Sbjct 2302357 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTAGTTTTACCT 2302298 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 | ||| || || |||||| ||||||| || || | |||||||| || || | Sbjct 2302297 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTACATCTTCCCGTAC 2302238 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 ||||| | | ||| | |||||||||||| || || || |||||| || | Sbjct 2302237 CCCAACGCTCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 2302178 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || | | | || ||||| || | ||| || || || || Sbjct 2302177 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 2302118 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAA 33573 || | | | | ||| ||| ||||| ||| | | || | | | || Sbjct 2302117 GCGTCCCTCACTAACCCTCTCACGCGCTCTTCGCTCAGCTTTGACCGGAGGAGGGAGTA- 2302059 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 || ||| || ||||||||||| || ||||| || |||| ||||| ||||| || | Sbjct 2302058 -CAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||| ||||||| || |||||||| | ||||||||| | ||| ||| | Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAG 2301940 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33750 | ||||| || ||||| || |||||| || || || | || | || | | | Sbjct 2301939 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 2301880 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| || ||||| ||||| ||||| ||||| |||| ||||| | Sbjct 2301879 CGTC---GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGA 2301823 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||| | ||||| ||| ||||| || || || | ||||| || | | |||| Sbjct 2301822 CGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGAC 2301763 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||||| || || || || ||||| ||||| || || || || ||||| | ||||| Sbjct 2301762 TATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCT 2301703 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| || || ||||| | || || | || | |||||| || || ||||| Sbjct 2301702 CGGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGG 2301643 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 |||||| || || || | || || | || || | |||| | || || | | Sbjct 2301642 AGGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTT 2301583 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | ||| || | ||| ||||| || | |||||||| || || || | Sbjct 2301582 CCCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGG 2301523 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || || ||||| | ||| | || | |||||||| ||||| || Sbjct 2301522 CTTTCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAACAT 2301477 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| ||||| ||||| | || || | | |||||| | |||||| | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||| ||||| || | || |||||| || || || || || Sbjct 6395602 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 6395648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814206857680