Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 >seq4 Length=31929104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 229/345 (66%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || || || ||||| ||||| | |||||| |||| |||| || || || || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 ||||| ||||| || || || ||||||| |||||||||||| ||| || ||||| || Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGC-GCAGAAACTTCCAGAGAA 2301936 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC---ATATACCTTGTTGCT 11802 ||| || || ||||| ||||| || | || | ||| | | | || | | Sbjct 2301935 GAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-T 2301877 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | |||||||| ||||| || |||||||| || || || |||||| | || Sbjct 2301876 CG--ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGC 2301819 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 || || | | | ||||| | || | | || || || | | | |||||| Sbjct 2301818 GTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATA 2301759 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 ||| || || || |||||||| || || ||||| || |||||||| Sbjct 2301758 CATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAA 2301714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522275822640