Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq5 100 3e-16 seq2 89.7 5e-13 seq1 89.7 5e-13 seq7 84.2 2e-11 >seq6 Length=26303135 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--G 139609 |||||| || |||| || |||||||| |||||||||||||| || || |||| | Sbjct 25054317 CAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGT--TCGACCG 25054260 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || |||||| |||| || | |||||| || || || || ||||| ||| Sbjct 25054259 TCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTCCTTG 25054200 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | || || || | ||| | | Sbjct 25054199 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGTTATC 25054140 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || |||| || || ||||| || ||||| Sbjct 25054139 GTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 25054105 >seq5 Length=39371879 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| || |||||||| || || | ||| || |||||||| || Sbjct 2688688 GTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2688747 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || || || |||||||| |||||||||||||| |||||| || Sbjct 2688748 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTG 2688807 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| ||| || || | ||| | || ||||||||||| ||| Sbjct 2688808 ACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2688867 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 2688868 TTGACAAAGATTTGCATA 2688885 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||||||||| | Sbjct 2688886 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCC 2688945 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||||||| || || |||| || | |||||| ||||| || Sbjct 2688946 AAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGG 2689005 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||||| |||||| Sbjct 2689006 ATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCCACT 2689065 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || |||||||| ||||| ||||| || |||||| Sbjct 2689066 TCGAGGGTGATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATA 2689113 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| | Sbjct 2689114 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCC 2689173 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCA-GCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||||||| ||| || |||| || | |||||| ||||| || Sbjct 2689174 AAGGTACGGCCGTCTTCGAGCTGTTTGCCACGCGAAGATGAGCCTTTGCTGGTCGGGTGG 2689233 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| ||| || Sbjct 2689234 GATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGAC 2689293 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||||| ||||| ||||| || ||||| Sbjct 2689294 CTCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2689341 >seq2 Length=41236440 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| ||| | || | |||||| ||||| || || Sbjct 32406512 GTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCG 32406571 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| |||||||| || || ||||| |||||||| ||||| ||| || || Sbjct 32406572 GCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 32406631 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || || ||||| | ||| | ||||| || || | ||| Sbjct 32406632 ACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTT 32406691 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 32406692 TTCACGAAGATCTGCAT 32406708 >seq1 Length=37323695 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || || || || ||||| || || ||| | |||| |||||||||||| Sbjct 32435711 GTGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTG 32435770 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| |||||||||||||| || || || ||||| ||||| ||| || Sbjct 32435771 CTTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTT 32435830 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | ||||| | || || ||||| | ||| | ||||| || || Sbjct 32435831 GGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGT 32435890 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 32435891 TAGGGTTTTGACGAAGATCTGCAT 32435914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||||||||| || ||||||| ||||| || ||||| || ||||| || Sbjct 11148464 CCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCG 11148405 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| || |||||| |||| || | |||||| || || || Sbjct 11148404 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 11148345 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| ||| || | | || | ||||| | ||| ||| Sbjct 11148344 ATACCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTCTCAACC 11148285 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||| | || || || || |||||||| Sbjct 11148284 TCCAATGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTTGCAT 11148238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| ||||||||||||||||| Sbjct 11148236 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCA 11148177 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| | |||| | |||||||| || || Sbjct 11148176 AGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGG 11148117 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || ||||| || ||| | || | || | | || | ||||| | | ||| || Sbjct 11148116 ATACCCTCTTTATC-CTGAATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTAC 11148058 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||| || || || | || || || || |||||||| Sbjct 11148057 CTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 >seq7 Length=21614486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/122 (76%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--G 139609 |||||| ||||||| || ||||| ||||| |||||||||| || | | |||| Sbjct 12529381 CAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAAT--CTGCAAGAGTTCGACCA 12529324 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| | |||| | |||||||| ||||| || ||||| ||| Sbjct 12529323 TCTTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGGATTCCTTCCTTG 12529264 Query 139670 TC 139671 || Sbjct 12529263 TC 12529262 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||||| || ||||| ||||| ||||||||||| | || | || Sbjct 12548007 CAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGCAAGAGTTCAACCATC 12547948 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| |||||| | |||| | |||||||| ||||| || ||||| ||||| Sbjct 12547947 TTCAAGCTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGGATTCCTTCCTTGTC 12547888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061327455200