Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 seq1 95.1 2e-14 seq8 91.5 2e-13 >seq4 Length=31929104 Score = 134 bits (148), Expect = 2e-26 Identities = 384/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||||||||| || ||||| || |||| |||| ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || ||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCCA 2301941 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || ||||| || ||||| || | || | || | || | | Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 2301881 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| || ||||| ||||| ||||| ||||| |||| ||||| | | Sbjct 2301880 CCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACG 2301821 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | ||||| ||| ||||| || || || | ||||| || | | |||||| Sbjct 2301820 GCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTA 2301761 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || || ||||| ||||| || || || || ||||| | ||||||| Sbjct 2301760 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCG 2301701 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || || ||||| | || || | || | |||||| || || || || | Sbjct 2301700 GCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAG 2301641 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG--TTGGGTGTTAGTTTAT 50428 ||||| || || || | || || | || || || |||| | ||| |||| | Sbjct 2301640 GCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTT--T 2301583 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | ||| || | ||| ||||| || | |||||||| || || || | Sbjct 2301582 CCCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGG 2301523 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 | || || ||||| | ||| | || | |||||||| ||||| || Sbjct 2301522 CTTTCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAACAT 2301477 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || |||||||| || || |||||| ||| ||||| | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| ||||| ||||| | | ||| | | |||||| | ||| || | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||| ||||| || | || |||||| || || || || || Sbjct 6395602 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 6395648 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 6395078 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 6395137 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||||||||| || || ||||| || || |||| |||||||| || || Sbjct 6395138 ATTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGA 6395197 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 6395198 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 6395257 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 || || || |||||||| |||| Sbjct 6395258 TCCTTCAATACTATCATCTTTCAT 6395281 >seq8 Length=19593398 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 || ||||| ||||| |||| || ||||| || |||||| ||| ||| ||| || | Sbjct 16108495 TCATATTGGGTATACAATCTTTTAAACTCTTCGCCCCAACAATCAGCTAGACCATGAGCT 16108436 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || |||||| | ||| ||||| | ||||||| | | || | || ||| || || ||| Sbjct 16108435 TCAGAAGGACAGAACAAGGACCATTTTCCATCACCTTGAACCCTTTCCATGAAAAGGTCA 16108376 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTC 79987 |||| ||||||||| ||||||||||| Sbjct 16108375 GGAACCCAAAGAGCCTAAAATAGATCTC 16108348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264930326840