Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 >seq4 Length=31929104 Score = 113 bits (124), Expect = 4e-20 Identities = 369/564 (65%), Gaps = 11/564 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| ||||| || || ||||||| || | ||||| || || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| || || || ||||||||||||||||| || ||| || || || || Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGC-GCAGAAACTTCCAGAGAA 2301936 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || || |||||| || |||| ||||| | || | | | | | Sbjct 2301935 GAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-T 2301877 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || |||||||| ||||| || | ||| || | | | || |||||| | || Sbjct 2301876 CG--ATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGC 2301819 Query 14108 ATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | || | | ||| || || ||| |||| ||||| || |||| || | ||| Sbjct 2301818 GTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTA 2301761 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC 14224 ||||| || ||||| || ||||| || || || || || ||||| || ||| | ||| || Sbjct 2301760 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCCTC 2301702 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| |||||| || | |||| | |||||| || || ||||| Sbjct 2301701 GGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGA 2301642 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 ||||| || || || | | || | || |||| | || ||| | | || ||| Sbjct 2301641 GGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTC 2301582 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| | | || |||| || ||||| ||||| || | |||||||| || | || Sbjct 2301581 CCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGC 2301522 Query 14405 TTTTTTATACATTACCCATATTTC 14428 ||| || |||||| |||||| ||| Sbjct 2301521 TTTCTTGTACATTTCCCATACTTC 2301498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||| || Sbjct 27278579 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAA 27278520 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13968 |||||||||| ||| | ||||| | ||| || |||| Sbjct 27278519 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTG 27278483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725415465400