Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 >seq4 Length=31929104 Score = 114 bits (126), Expect = 1e-20 Identities = 364/562 (65%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || ||||| ||||| || || ||||||| || | ||||| || || ||| Sbjct 2302054 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTT 2301995 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || || ||||||||||||||||| || ||| ||| || ||| Sbjct 2301994 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAG 2301935 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || || || |||||| || ||||| ||||| | || | | | || Sbjct 2301934 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGT-- 2301877 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 |||||||| ||||| || | ||| || | | | || |||||||| || Sbjct 2301876 -CGATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCG 2301818 Query 13897 TTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | ||| | | | ||| || || ||| |||| ||||| || |||| || | |||| Sbjct 2301817 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 2301760 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || ||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 2301759 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 2301700 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||| || ||| || | | || | ||||| || || ||||| | Sbjct 2301699 CGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCGGAGG 2301640 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 |||| || || || | | || | || |||| | || ||| | | || ||| || Sbjct 2301639 CTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTTTCCC 2301580 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | | | || |||| || ||||| ||||| || | |||||||| || | |||| Sbjct 2301579 AGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTTCGGCTT 2301520 Query 14195 TTTTATACATTACCCATATTTC 14216 | || |||||| |||||| ||| Sbjct 2301519 TCTTGTACATTTCCCATACTTC 2301498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||| || Sbjct 27278579 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAA 27278520 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 |||||||||| ||| | ||||| | ||| || |||| Sbjct 27278519 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTG 27278483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586221602840