Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq8 87.8 2e-12 seq1 84.2 3e-11 >seq4 Length=31929104 Score = 145 bits (160), Expect = 1e-29 Identities = 389/589 (66%), Gaps = 12/589 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||||||||| || ||||| ||||||| ||||| ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||| ||||||| || |||||||| | ||||||||||| |||| || |||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCCA 2301941 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCA 42232 || ||||| || ||||| || ||||| || || || | || | || | | | Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 2301881 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| || ||||| ||||| ||||| ||||| |||| ||||| Sbjct 2301880 CCGTC---GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCG 2301824 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | ||| | ||||| ||| ||||| || || || | || || || | | ||| Sbjct 2301823 ACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGA 2301764 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || || || ||||| ||||| || || || || ||||| | ||| Sbjct 2301763 CTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCC 2301704 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| | || ||||| | || || | || | ||||||| || || || || Sbjct 2301703 TCGGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGCCATCG 2301644 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAATT 42530 |||||| || || || | || || | || || | |||| | |||| | || Sbjct 2301643 GAGGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAAGAGTT 2301584 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | ||| | | ||| || | ||| ||||| || | |||||||| || |||| Sbjct 2301583 --TCCCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGGCTT 2301526 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | || || || ||||| | ||| | || | ||||| || ||||| || Sbjct 2301525 CGGCTTTCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAACAT 2301477 >seq8 Length=19593398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 || ||||| ||||| |||| || ||||| || |||||| || ||| ||| || | Sbjct 16108495 TCATATTGGGTATACAATCTTTTAAACTCTTCGCCCCAACAATCAGCTAGACCATGAGCT 16108436 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||| ||||| | ||| ||||| | ||||||| | | || | || ||| || || ||| Sbjct 16108435 TCAGAAGGACAGAACAAGGACCATTTTCCATCACCTTGAACCCTTTCCATGAAAAGGTCA 16108376 Query 72043 GGAATCCAAAGAGCTATAAATAGATCTC 72070 |||| ||||||||| ||||||||||| Sbjct 16108375 GGAACCCAAAGAGCCTAAAATAGATCTC 16108348 >seq1 Length=37323695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 6395078 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 6395137 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| |||||| || || ||||| || || |||| |||||||| || || Sbjct 6395138 ATTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGA 6395197 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 6395198 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 6395257 Query 72357 GCCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 6395258 TCCTTCAATACTATCATCTTTCAT 6395281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135584237560