Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 114 2e-20 >seq4 Length=31929104 Score = 114 bits (126), Expect = 2e-20 Identities = 371/562 (66%), Gaps = 28/562 (5%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||||||||||||| || || | |||||||||||||| | ||| || |||||||| || Sbjct 2301504 TGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAGGAAGTCGATCTCTCG 2301563 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||| || | | ||||| |||| | || || || || | || || | ||| Sbjct 2301564 TCGGATCTACGCCACTGGGAAACTC---TTACCGATGGCGAACGCCACTTCATCACTCAC 2301620 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT----GTTGACACG 125197 | | |||||||| || | ||||||||| |||||| ||| ||||| ||| || Sbjct 2301621 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGTT----CG 2301676 Query 125198 ATTCTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 ||| | ||| ||| | || | |||| |||||| || || || ||||||||| Sbjct 2301677 GTTC-ATGAAGGAAGTCCA-AATCGCCGAGG-CTCGTGCGTTCTATGGCTTCCAAATCGC 2301733 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 || || || | ||||| || ||||| | || |||| | |||| || | | Sbjct 2301734 CATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACA-TCAAGGACT 2301792 Query 125315 GCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 ||||| ||| || |||||| |||| |||| || ||||||| | | ||| || | Sbjct 2301793 CCAACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCGTGTGTGGCTAAGAAAG 2301852 Query 125374 CTCAATGGGTGATTCGGTGGATCGATG--ACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 | | |||| | | |||||||| | || || | | |||||| | || | Sbjct 2301853 CCGAGTGGGCGTTGAAATGGATCGACGGTTCGGAAA-----CTTTCGCCGAACGGCTAAT 2301907 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGC 125490 || || || ||| || || || ||||| || || ||||| ||| || || |||||| Sbjct 2301908 CGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-GCTATATTTTGGT 2301966 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | || |||||||| | ||||| ||| | || | |||||||| || || ||||| | Sbjct 2301967 TAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAGATG 2302026 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | || || || || || || || Sbjct 2302027 AAGGTCTCCATTGCGATTTCGC 2302048 Score = 104 bits (114), Expect = 3e-17 Identities = 179/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| |||| ||| || ||| ||| | ||| || |||||||| ||| | || || | Sbjct 25784345 CCGTGAGTCAAGTGACCACCGGAGGGTAAATCCAGACCCATGATCCTATCATGGGGCTGG 25784286 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||||| |||||||||| ||| || |||||||| || |||||| || Sbjct 25784285 AGAATAGCCGTGTAAGCGGCAAAGTTTGCCGGTGAACCCGAGTAAGGCTGTACATTGACA 25784226 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCT-GCTGTGCTAGCAGTTC 127625 ||||| | || || | || ||| || ||| | | ||| ||| ||| || |||| Sbjct 25784225 CCCCACTTGGTGGGGTCGAGATGGAAAGC-CTGC-AGAGCGCGAGCTCTGC-AGAGGTTC 25784169 Query 127626 --GATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 ||| ||||| || ||||| || || |||||||| || || ||| | ||||| ||| Sbjct 25784168 TCGATCTCGTCGATGAATTCGTTGCCTCCGTAGTATCGGTTCCCTGGCATGCCCTCGGAG 25784109 Query 127684 TACTTGTTGATGAG 127697 ||||||||| |||| Sbjct 25784108 TACTTGTTGGTGAG 25784095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055207543560