Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 127 1e-24 seq5 107 1e-18 seq7 105 5e-18 seq1 95.1 9e-15 seq2 93.3 3e-14 >seq6 Length=26303135 Score = 127 bits (140), Expect = 1e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || |||||||| ||| | || | ||||| ||||| Sbjct 25054535 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 25054476 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| ||||||| | ||| || || |||||| ||||| ||||| ||| ||| Sbjct 25054475 TTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTT 25054416 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || |||||||| | || || || || ||||||||||| ||||| Sbjct 25054415 GC-CTTAACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGT 25054357 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || ||||| ||||| Sbjct 25054356 CAGAGTCTTAACGAAAATCTGCAT 25054333 >seq5 Length=39371879 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGC 15207 || ||||| | ||||||||| || || ||||||||||||||||| || || | ||| | Sbjct 2688442 CTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAG-GTCCTCCC 2688500 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||| || | || || |||||| | ||||| ||||||||||| ||| || ||||| || Sbjct 2688501 GTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGGATCCCTTCCTT 2688560 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||| || | || || || || | || || || | ||| || Sbjct 2688561 ATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGGGTTAT 2688620 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||| ||||| ||||| |||||||| Sbjct 2688621 AGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2688656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || ||||| || || ||||| | | | | |||| || | ||| Sbjct 2688682 TGGAGAGTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGT 2688741 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | || ||||||||| || || ||||||||||| |||||| Sbjct 2688742 TTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTG 2688801 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || ||| | | || || || | ||| |||||||| || ||| Sbjct 2688802 GCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTC 2688861 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | |||||| ||||| ||||||||| Sbjct 2688862 AAAGTTTTGACAAAGATTTGCATA 2688885 >seq7 Length=21614486 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || ||||| || |||||||| || | ||| | || || Sbjct 2896024 ACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCAAGCGTCCTCCCATCCTCC 2896083 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || |||||||| || |||||| | ||||| || || || ||||| ||||| Sbjct 2896084 AACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGG 2896143 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| |||||| | || |||||||| | | || || || |||||||| || || Sbjct 2896144 ATCTTAGCT-TTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATTGTCTT 2896202 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| |||||||||||||| Sbjct 2896203 TCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || ||||| || |||||||| || | ||| | || || Sbjct 2883034 ACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCAAGCGTCCTCCCATCCTCC 2883093 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || |||||||| || |||||| | ||||| || || || ||||| ||||| Sbjct 2883094 AACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGG 2883153 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| |||||| | || |||||||| | | || || || |||||||| || || Sbjct 2883154 ATCTTAGCT-TTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTT 2883212 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || |||||||||||||| Sbjct 2883213 TCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || ||||| ||||| ||||| || | || | ||||| Sbjct 11148219 AACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTC 11148160 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | ||||| | || || || ||| || || ||||| || Sbjct 11148159 AAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTG 11148100 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || || || || | ||||| || || || || ||||| Sbjct 11148099 AATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTACCTCCAAAGTGATCGTTTT 11148040 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || ||||| |||||||| Sbjct 11148039 ACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || ||||| ||| || | | ||||||| | || Sbjct 32435712 TGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGC 32435771 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | |||||| || || ||| |||||||| ||||| || ||| Sbjct 32435772 TTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTG 32435831 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || ||| || |||| ||| ||||| || || || Sbjct 32435832 GCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTT 32435891 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 32435892 AGGGTTTTGACGAAGATCTGCATCTTTG 32435919 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||||||||| || || || || || || || ||| | | ||||||| Sbjct 11147990 ACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTGCGACCGTCTTCA 11147931 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||| | || | | |||||| || || |||||||| ||||| Sbjct 11147930 AGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGG 11147871 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || ||||| | || || || ||||| || || || Sbjct 11147870 ATCTTCGCT-TTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATAGTCTT 11147812 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || ||||| ||||||||| Sbjct 11147811 TCCTGTGAGTGTCTTGACAAAGATTTGCATA 11147781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || || || || || || || ||| ||| | ||||| Sbjct 11147762 ACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCGACCATCTTCA 11147703 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||| | || | | ||| ||||| || |||||||| ||||| Sbjct 11147702 AGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 11147643 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || ||||| | || || || | ||| ||||| || Sbjct 11147642 ATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTCAACCTCAAGGGTGATGGTCTTG 11147583 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||| Sbjct 11147582 CCTGTTAGGGTTTTCACAAAGATTTGCAT 11147554 >seq2 Length=41236440 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || ||||| || ||| ||| | | ||||||| | || Sbjct 32406505 ATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTG 32406564 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | || | |||||||||||| || || ||||| ||||| || || Sbjct 32406565 CTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTT 32406624 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| ||| || || ||||| ||||| ||||| || Sbjct 32406625 GGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGT 32406684 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 32406685 TAGGGTTTTCACGAAGATCTGCAT 32406708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177297540571