Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq7 98.7 8e-16 seq1 84.2 2e-11 >seq5 Length=39371879 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| | || | ||| | || ||||||||||| ||||| ||||| ||| Sbjct 2688658 CCTCCACGGAGCCTGAGGACAAGGTGGAGAGTCGACTCCTTTTGGATATTATAATCAGCC 2688717 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||||||||||||||| || || | || || | ||| || || || Sbjct 2688718 AAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGG 2688777 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||||| || || | | ||| || ||| | ||| | Sbjct 2688778 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACT 2688837 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| |||||||| || || |||||||||||||| |||||||| Sbjct 2688838 TCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCAT 2688884 >seq7 Length=21614486 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | || ||||||||||| ||||||||||| | Sbjct 2896004 TTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTG 2896063 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||| |||||| || ||| | || || ||||| ||||| | Sbjct 2896064 CAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAG 2896123 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| || || |||||| | | | | ||||| | ||| Sbjct 2896124 GGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAA 2896183 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || || || | |||||| |||||||||||||| Sbjct 2896184 CTTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | || ||||||||||| ||||||||||| | Sbjct 2883014 TTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTG 2883073 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||| |||||| || ||| | || || ||||| ||||| | Sbjct 2883074 CAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAG 2883133 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| || || |||||| | | | | ||||| | ||| Sbjct 2883134 GGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAA 2883193 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || || || | ||| || |||||||||||||| Sbjct 2883194 CTTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 >seq1 Length=37323695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||||||||| || ||||| || | ||| | | || || Sbjct 11148218 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTCA 11148159 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || ||||| || ||| |||| | ||||||||||| || | |||||||| || | Sbjct 11148158 AGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTGA 11148099 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | ||| || | || ||| || | || || ||||| Sbjct 11148098 ATCTTAGCCTTGACATTGTCAATAGTGTC-CGAGCTCTCTACCTCCAAAGTGATCGTTTT 11148040 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| | ||| |||||||| |||||||| Sbjct 11148039 ACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570622326814