Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 3e-13 >seq6 Length=26303135 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || ||| |||||||| | |||||||||||| || || || ||||||| |||| | | Sbjct 25054320 CCTCAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACC 25054261 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| || | ||||| ||| ||| || | | ||||||||| | || || ||||| || Sbjct 25054260 GTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATTCCTTCCTT 25054201 Query 33274 TTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | | | ||| || || | | || |||||| | || || ||||| || Sbjct 25054200 GTCCTGGATCTTGGCC---TTCACGTTGTCGATGGTGTCGGAGCTTTCGACTTCCAGGGT 25054144 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || ||||| || || || ||||| || ||||| Sbjct 25054143 TATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 25054105 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| || | || ||||| || || ||||||||||||| || | | | Sbjct 25054547 CGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCA 25054488 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| |||||| || | |||||| || | || || ||||| || Sbjct 25054487 TCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTG 25054428 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| || || | | || |||| ||| Sbjct 25054427 TCCTGAATCTTTGCC---TTAACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTA 25054371 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||| || |||||||| ||||| Sbjct 25054370 ATGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318775925521038