Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7 82.4 5e-11 >seq7 Length=21614486 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACG-CTCATCGT 43970 |||||| || || || ||| ||||| ||||| ||||| | || | | | |||| | Sbjct 2883033 CACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATC-TGCAAGCGTCCTCCCATCCT 2883091 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||| ||||| || |||||||||| || || || || |||| | |||||| || || Sbjct 2883092 CCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCT 2883151 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || ||| || | ||| ||||| | ||| || || | ||||| || | Sbjct 2883152 GGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATAGTCT 2883211 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || | |||||||||||| ||||||||| Sbjct 2883212 TTCCAGTGAGAGTCTTCACAAAAATTTGCATG 2883243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775736419788