Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq9 96.9 3e-15 seq6 84.2 2e-11 seq5 84.2 2e-11 >seq7 Length=21614486 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || |||||| |||||||| || || || | || | || Sbjct 2896249 AACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCT 2896308 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||| || ||| | ||||||| | |||||| ||| || | || ||||||||| Sbjct 2896309 TCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCC 2896368 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | |||||||| | | |||| ||| | || |||||| Sbjct 2896369 TGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTT 2896428 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| |||||||| Sbjct 2896429 TTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || |||||| |||||||| || || || | || | || Sbjct 2883259 AACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCT 2883318 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||| || || | ||||||| | |||||| || || | || ||||||||| Sbjct 2883319 TCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 2883378 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | |||||||| | | |||| ||| | || |||||| Sbjct 2883379 TGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTT 2883438 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| |||||||| Sbjct 2883439 TTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2883470 >seq9 Length=38630433 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||||| ||| |||||| || ||||||||||| || Sbjct 27803718 CCTCCACGGAGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGC- 27803660 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||||| |||||| ||| || | || || | |||||||||| | Sbjct 27803659 AAGGGTC-CTGCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAG 27803601 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| ||||| ||||| | || ||||| | | ||| Sbjct 27803600 GGATCCCTTCCTTATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTA 27803541 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| ||||| | ||||| || ||||||||||| Sbjct 27803540 CCTCCAGAGTAATAGTTTTCCCGGTCAAGGTTTTAACGAAAATCTGCAT 27803492 >seq6 Length=26303135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| || || ||||||||||| ||| || |||||||| ||||||||| Sbjct 25054331 CCACCACGGAGCCTCAAAACCAAATGAAGTGTCGACTCTTTCTGAATGTTATAATCAGCC 25054272 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| ||||||| |||||||| || | | || | | ||||| || ||| Sbjct 25054271 AAAGTTCGACCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGG 25054212 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||| | | | || ||||| |||| || | || Sbjct 25054211 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCG--ATGGTGTCGG-AGCTTTCG 25054155 Query 48678 TC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || | ||||| || ||||| || || || || || || ||||||||| Sbjct 25054154 ACTTCCAGGGTTATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCATC 25054104 >seq5 Length=39371879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| || || ||||||||||| || ||||||||||||| || ||| || | Sbjct 2688693 CTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2688752 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||| || || || | | ||| |||||| ||||| ||||| | Sbjct 2688753 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTT 2688812 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| | ||| |||| || |||||||| ||||| | |||||| Sbjct 2688813 GTCG--ATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTG 2688870 Query 48713 ACAAAAATCTGCAT 48726 ||||| || ||||| Sbjct 2688871 ACAAAGATTTGCAT 2688884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248987246431