Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9 118 6e-22 seq2 111 8e-20 seq1 109 3e-19 seq6 107 1e-18 seq3 107 1e-18 seq4 105 3e-18 >seq9 Length=38630433 Score = 118 bits (130), Expect = 6e-22 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || ||| |||| ||||||| | ||| ||||||||| | | |||||||| ||||||||| Sbjct 9538222 AAGTATTGAATGAATAAAATA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 9538279 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 9538280 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 9538320 >seq2 Length=41236440 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1613016 AAAAAT-ATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1612958 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1612957 CTCTAACCAACTGAGCTAATAGGCC 1612933 >seq1 Length=37323695 Score = 109 bits (120), Expect = 3e-19 Identities = 78/88 (89%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| ||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 693223 AAAAATCAATATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 693164 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 693163 ACGCTCTAACCAACTGAGCTAATAGGCC 693136 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2060517 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2060576 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2060577 CAACTGAGCTAATAGGCC 2060594 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5037701 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5037760 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5037761 CAACTGAGCTAATAGGCC 5037778 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 12393456 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12393397 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 12393396 TGAGCTAATAGGCC 12393383 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | || |||| | | |||||||||||||||||||| |||||| || Sbjct 7089525 AAATTGGCCCATGCAGGTAT-GAACTTGCAACCTTCGCGTTATTAGCACGGCGCTCTAAC 7089467 Query 11512 CAACTGAGCTAATGGGCC 11529 ||| ||||| ||| |||| Sbjct 7089466 CAATTGAGCCAATAGGCC 7089449 >seq6 Length=26303135 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11446 AAAATC---AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18427881 AAAATCCAAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18427822 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 18427821 CGCTCTAACCAACTGAGCTAATAGGCC 18427795 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 22768956 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 22769015 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 22769016 CTGAGCTAATAGGCC 22769030 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 26074370 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 26074311 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 26074310 CTGAGCTAACAGGCC 26074296 >seq3 Length=36364294 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 22008593 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 22008534 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 22008533 CAACTGAGCTAATAGGCC 22008516 >seq4 Length=31929104 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 18305276 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 18305335 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 18305336 CTGAGCTAATAGGCC 18305350 Score = 93.3 bits (102), Expect = 2e-14 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||| ||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22678500 TGGTCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22678559 Query 11516 TGAGCTAA 11523 |||||||| Sbjct 22678560 TGAGCTAA 22678567 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489826435756