Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 158 2e-34 seq10 118 2e-22 seq5 118 2e-22 seq6 109 9e-20 >seq9 Length=38630433 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || |||||||||||||| || | ||||||||||||||||| |||||| Sbjct 13161759 GATAACATCCAGGGGATCACCAAGCCAGCCATAAGGCGTCTGGCTCGTCGTGGAGGAGTC 13161700 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| || | || | |||||||| || || Sbjct 13161699 AAGCGTATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTCTGGAG 13161640 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || || | ||| || ||||||||| || |||||||| || | Sbjct 13161639 AACGTAATTCGCGACGCCGTTACCTACACTGAGCACGCTCGCCGGAAGACTGTTACGGCT 13161580 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||| ||||| ||||| | |||||||||| |||| |||||||| ||||| Sbjct 13161579 ATGGATGTCGTTTATGCCTTGAAGAGACAAGGCCGTACCCTTTACGGTTTTGGCGGTTAA 13161520 Score = 149 bits (164), Expect = 1e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || |||||||||||||| ||||| ||||| || || Sbjct 36829448 GCAAAGCGACACCGTAAGGTC-CTCCGTGATAACATCCAAGGGATCACTAAGCCGGCAAT 36829390 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | || ||||||||||| || || || |||| || || | Sbjct 36829389 CCGGCGTTTGGCTCGTAGGGGAGGAGTCAAGCGAATCAGCGGTTTAATCTACGAGGAAAC 36829330 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||||||||| | ||| ||| || | |||||| || ||| || || Sbjct 36829329 TCGTGGAGTTCTGAAGATCTTCTTGGAGAACGTGATTCGTGATGCCGTCACCTACACTGA 36829270 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| | | |||||||| || | |||||| | ||||||||| |||| Sbjct 36829269 GCACGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTCTATGCACTGAA 36829219 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||| ||||| || || || |||||||||||| | || || || Sbjct 36535522 GATAACATCCAGGGAATCACTAAGCCCGCCATTCGCCGTCTGGCTCGTAGAGGAGGTGTG 36535581 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || ||| |||||||||| | | | || |||||||| ||| | || Sbjct 36535582 AAGAGGATCAGCGGCTTGATCTATGAAGAAACCAGAGGAGTCTTGAAGATTTTCTTGGAG 36535641 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || || |||||||| | | | |||||||| || || Sbjct 36535642 AACGTGATTCGCGATGCTGTGACATACACTGAGCACGCAAGAAGGAAGACTGTTACTGCC 36535701 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || |||||||| | || ||| | | | ||||| ||||| ||||| Sbjct 36535702 ATGGATGTTGTTTACGCATTGAAGAGGCAGGGCAGGACTCTCTATGGCTTTGGTGGTTAA 36535761 Query 16700 TCTTCT 16705 |||| Sbjct 36535762 GATTCT 36535767 >seq10 Length=21822658 Score = 118 bits (130), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||||||||| ||||| |||||||||||||| |||||||| | | || Sbjct 2283450 CTCCGAGATAACATCCAAGGGATCACGAAGCCAGCTATCCGACGTCTGGCGAGGAGAGGC 2283509 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || ||| | ||||| |||| || | ||||||||||||||| Sbjct 2283510 GGAGTTAAGAGGATCAGCGGCTTGATTTATGAGGAGACGCGAGGTGTTTTGAAGATCTTT 2283569 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || | || || || || ||| | ||||| ||| Sbjct 2283570 TTGGAGAACGTGATCCGCGACGCCGTTACTTACACGGAACATGCTCGGAGAAAGACCGTC 2283629 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| |||||||| | || || || Sbjct 2283630 ACCGCCATGGATGTTGTTTACGC 2283652 Score = 113 bits (124), Expect = 7e-21 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| |||||||| ||||| ||| ||||||| ||||| Sbjct 3290239 CTCCGCGATAACATCCAAGGGATCACAAAGCCAGCCATCCGCCGTTTGGCTCGCCGTGGC 3290180 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || || || | | || || |||| || | || | || |||||| Sbjct 3290179 GGTGTTAAACGCATCAGCGGTCTTATTTACGAGGAGACACGCGGCGTCCTCAAAATCTTC 3290120 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| ||| || || | ||| ||||||||||| || || || ||| Sbjct 3290119 CTTGAAAACGTCATCAGAGACGCCGTTACCTACACCGAGCACGCCCGTCGCAAAACCGTC 3290060 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||| || || | || | |||||||||| |||| || ||||| Sbjct 3290059 ACCGCCATGGACGTCGTTTACGCGCTCAAGAGACAAGGCCGTACTCTTTACGGGTTTGGT 3290000 Query 16694 AGTTA 16698 |||| Sbjct 3289999 GGTTA 3289995 >seq5 Length=39371879 Score = 118 bits (130), Expect = 2e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||||||||| || || ||||||||||| || || || | |||||||| | ||| Sbjct 1957977 CTTCGAGATAACATTCAGGGTATCACCAAGCCGGCGATTCGAAGGTTGGCTCGTAGAGGT 1958036 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || ||| |||| || |||| |||| || | |||||||| Sbjct 1958037 GGTGTGAAGAGGATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTTAAGATCTTT 1958096 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || |||| ||| || | |||||| |||||||||| || |||||||| Sbjct 1958097 CTGGAAAATGTGATCCGTGACGCCGTTACCTATACGGAGCACGCTAGGCGCAAGACTGTT 1958156 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 1958157 ACCGCCATGGACGTCGTGTACGC 1958179 Score = 109 bits (120), Expect = 9e-20 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||| || || ||||||||||| || || || | |||||||| | ||| Sbjct 1966473 CTCCGAGATAACATTCAGGGTATCACCAAGCCGGCGATTCGAAGGTTGGCTCGTAGAGGT 1966532 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || ||| |||| || |||| |||| || | |||||||| Sbjct 1966533 GGTGTGAAGAGGATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTTAAGATCTTT 1966592 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || || | ||| || | |||||| |||||||||| || |||||||| Sbjct 1966593 CTGGAAAATGTGATTCGTGACGCCGTTACCTATACGGAGCACGCTAGGCGCAAGACTGTT 1966652 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 1966653 ACCGCCATGGACGTCGTGTACGC 1966675 >seq6 Length=26303135 Score = 109 bits (120), Expect = 9e-20 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| ||||| ||||| ||||| || || || | ||||||| || ||||||| Sbjct 20873012 GAGACAACATTCAAGGGATCACGAAGCCTGCAATTCGAAGGTTGGCTCGACGAGGTGGAG 20873071 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | || | | |||||||| | || | ||| | ||||| ||||| Sbjct 20873072 TGAAGAGGATTAGCGGTCTTATTTATGAAGAAACGCGAGGCGTTCTCAAGATTTTCCTTG 20873131 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| |||| || || | ||||| |||||||| | | ||||| || || Sbjct 20873132 AAAACGTGATCCGCGACGCGGTTACGTATACTGAGCACGCCAGGAGGAAGACGGTAACTG 20873191 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | || ||||| | ||||||||||||| ||| Sbjct 20873192 CTATGGATGTGGTTTATGCCTTGAAAAGACAGGGCCGAACCCTTTATGGTTTTGGCGGTT 20873251 Query 16698 AAT 16700 ||| Sbjct 20873252 AAT 20873254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074805933683