Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq431 648 0.0 >seq431 Length=160619 Score = 648 bits (718), Expect = 0.0 Identities = 723/958 (75%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| |||| ||||| ||||| | Sbjct 1504 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1447 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || ||||||||| |||| |||||| | |||||||| | Sbjct 1446 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1387 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCC 135609 | || || |||||||| |||| ||| || ||| || || || | ||||| || || Sbjct 1386 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 1329 Query 135610 CATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGT 135669 ||||||||||| || ||| ||||||| ||| |||| ||||| ||||||||| | ||| | Sbjct 1328 GATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAAT 1269 Query 135670 GGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTA 135729 || | |||||| | | ||||| | |||||||||||| ||||||||||| || Sbjct 1268 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1209 Query 135730 CCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTAC 135789 ||| |||||||||||||||||||| ||| || || ||||| |||||||| |||||| | Sbjct 1208 CCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGC 1149 Query 135790 TGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGG 135849 ||||||||| || |||| || | || ||||| ||| |||||||||||| || || Sbjct 1148 CGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 1089 Query 135850 CATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCA 135909 || ||||| ||||| |||| |||| |||| |||||||| ||||||||||| || ||||| Sbjct 1088 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCA 1029 Query 135910 TCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCA 135969 || || |||||||| || || ||||| || ||||| || || || ||| ||||||||| Sbjct 1028 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 969 Query 135970 TGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTA 136029 ||| || | || ||||||||| | | | || || || || ||||| || | Sbjct 968 TGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 909 Query 136030 TGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTT 136089 ||||||| ||||||||||| ||||| ||||| || || || |||||||||||||| || Sbjct 908 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 849 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 || || |||||||||||||||| |||||||| |||||||| ||||||| ||||| Sbjct 848 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCT 789 Query 136150 TGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTT 136209 |||||||||||||| || ||||||||||| | || | || | || ||||| || Sbjct 788 AGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTT 729 Query 136210 CAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAA 136269 |||||| ||||| ||||| |||||||| || | || | | ||||||||||| | || Sbjct 728 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 669 Query 136270 CACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 668 TACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 611 Score = 612 bits (678), Expect = 2e-170 Identities = 741/1006 (74%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| |||||||| || ||| | || | Sbjct 34763 TGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGCCTATTGCTCT 34822 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| |||| || ||||| ||||| || | Sbjct 34823 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 34882 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| || || || ||||| | ||| | |||||| |||||| | || || || | Sbjct 34883 GGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTAACCGCCGCAG 34942 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 34943 TTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGTCCTGAAGCAC 35002 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | || || || ||||| ||||| || ||||||| Sbjct 35003 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTTGCTCTCCACG 35062 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || || ||| | || || ||||| | | || |||| | | Sbjct 35063 GCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGATCTGTT---C 35119 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || |||||||||||||||||||| || ||||| || || || | Sbjct 35120 AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 35179 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| | |||||||| ||||||||||||| ||| |||||||| |||| Sbjct 35180 TCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCAG 35239 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || |||||| | | || | || || || ||||| ||||| | ||||| |||| Sbjct 35240 CTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAACCCATTTC 35299 Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471 |||||||||| || || ||| | | || | ||||||||| || |||||||||||||||| Sbjct 35300 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 35359 Query 138472 CAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAAC 138531 | || ||||||||||| | ||||||||| || ||||||| || || ||| | | Sbjct 35360 CCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 35419 Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591 | ||||||| |||||||| ||||||||||| || |||||||| | ||||| ||||||| Sbjct 35420 CAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 35479 Query 138592 TTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651 |||| |||||||| ||||| |||||| | || ||||||||| | ||||| || || | Sbjct 35480 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 35539 Query 138652 TGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATG 138711 ||| | |||| ||| | |||| | | ||||| ||||| |||||||| || |||| Sbjct 35540 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATG 35599 Query 138712 ATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCA 138771 | ||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct 35600 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 35659 Query 138772 AGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACG 138831 | || |||||| | || || ||| | ||||| |||||||| || ||||| ||||| | Sbjct 35660 AAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 35719 Query 138832 AAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| || | || ||||| || || | || | || |||||||| Sbjct 35720 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627964616822400