Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq431 600 3e-167 >seq431 Length=160619 Score = 600 bits (664), Expect = 3e-167 Identities = 730/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || || || || Sbjct 1504 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCT 1445 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || || | |||||||||||| Sbjct 1444 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 1385 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||||||||| |||||| Sbjct 1384 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGATC 1325 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| || | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 1324 TGGGAAGC-GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1266 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1265 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1206 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | |||| ||| || Sbjct 1205 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGC 1146 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | || ||| | || ||||| |||||| ||||||||||||||| || | Sbjct 1145 TGT-TTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1087 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| ||||| ||| | |||||||| || |||||||| ||||||||||| | Sbjct 1086 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACC 1027 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 1026 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 967 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 966 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 907 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 906 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 847 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||| ||||| || | Sbjct 846 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAG 787 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | ||| | | || || ||||||||||||||| Sbjct 786 CTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCA 727 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 |||| |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 726 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 668 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 667 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 608 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 607 GCTCATAACTTCCCTCTAGACCTAGCT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440860729836