Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq431 547 1e-150 >seq431 Length=160619 Score = 547 bits (606), Expect = 1e-150 Identities = 688/942 (73%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || |||||||||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 1522 GGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTAT 1464 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || ||||| || || ||||| || ||||| || || || |||||||| || |||| || Sbjct 1463 TGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1404 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 | | || || ||||| || || |||||||| || |||| |||| || || || Sbjct 1403 TCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 1344 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 ||| ||||| || || ||||||||||| ||| || ||||||| ||| | |||||||| || Sbjct 1343 TTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGG 1284 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| || | | | | |||||| | | || | | |||||||| | | Sbjct 1283 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 1224 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||||||| | |||| | |||||||| ||||||||| |||||| |||||||| || Sbjct 1223 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCC 1164 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030 ||| |||| ||| |||||| ||| | | || ||| ||||||| || || || || Sbjct 1163 TGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGA 1104 Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090 ||||||||| |||| || || || || |||||||||||| | |||||||| || ||||| Sbjct 1103 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACA 1044 Query 212091 TAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATT 212150 |||||||||||||||||||| || ||| ||| || || ||| | ||||| || | | Sbjct 1043 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 984 Query 212151 ATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTT 212210 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 983 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 924 Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 923 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 864 Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 ||| ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 863 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 804 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 ||||||||||||||| || | |||||||| | || | ||||| ||| || | ||||| Sbjct 803 TTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTAT 744 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 743 TAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 684 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 |||| || || ||| |||| |||| || ||||| | || ||||||||||||||||| Sbjct 683 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 624 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||| ||| | ||||| || |||||||| || ||| |||| Sbjct 623 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807550849296360