Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq431 556 1e-153 >seq431 Length=160619 Score = 556 bits (616), Expect = 1e-153 Identities = 719/988 (73%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| | || ||||||||||| || Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| |||||||| Sbjct 1504 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCC 1446 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | || || ||||| Sbjct 1445 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1386 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || || |||||||| | |||| |||| || ||||| || ||||| || || || Sbjct 1385 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1326 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||| || || | || || ||||| ||||| || |||||||| || || || | Sbjct 1325 CTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1266 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1265 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1206 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 1205 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGC 1146 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | |||||| ||||||| || || |||||||||||||| ||||| || Sbjct 1145 TGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1086 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 ||| ||||| |||||||||||| | || ||||| || ||||||||||| || |||||||| Sbjct 1085 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCC 1026 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||| ||||| ||| | ||||| || || |||||||| ||||| || Sbjct 1025 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 966 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | || || ||| | | ||||| || || || || || || | || | || Sbjct 965 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 906 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || | ||||| ||||| |||||||| ||||| || || ||||||||||| || || || Sbjct 905 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 846 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| |||||||| ||||| |||||||| |||||||| |||||||||||||| || Sbjct 845 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 786 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | ||||| ||| || | ||||| | || ||||| ||||| Sbjct 785 TGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 726 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTAC 171560 ||| || || ||||| ||||||||||| || || ||| ||| || | | ||| Sbjct 725 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 666 Query 171561 CAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | | Sbjct 665 C----TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 610 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 |||| || |||||||| ||||||||||| Sbjct 609 ATGCTCATAACTTCCCTCTAGACCTAGC 582 Score = 358 bits (396), Expect = 8e-94 Identities = 702/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| || || |||||||| || | || ||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || |||||||| ||| || || || Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || ||||| | || || ||| | || || || || ||| Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTA 34932 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | ||| | | ||||| |||||||| Sbjct 34933 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 34992 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||||| |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 34993 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTT 35052 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | || || | || ||||| |||||||| ||| | | || ||||| |||| || Sbjct 35053 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGA 35112 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | |||||||| | ||||| || || Sbjct 35113 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 35172 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||||| ||||||| | |||||||||| || || |||||| Sbjct 35173 TCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 35232 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | || | || || || || ||| || | || Sbjct 35233 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAAC 35292 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || ||| || | || | || | ||||| || || ||| Sbjct 35293 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 35352 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 ||||| || || | || || || | |||||| || | | | | Sbjct 35353 GGTGCTACCGTGGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 35395 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 ||| |||| ||| | || || | || || || | |||||||||||| ||| | Sbjct 35396 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 35451 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 35452 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 35511 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 35512 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 35571 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 ||||| || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 35572 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 35631 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 35632 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 35691 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 35692 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 35751 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 35752 CGTGGAAACGCTCTTTAA 35769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265727676840