Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 >seq4 Length=31929104 Score = 104 bits (114), Expect = 2e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| || || ||||| ||||| | ||||||||| | ||||| || || || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | ||||| || |||||||| || | |||||||||||||||||| | |||| || ||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCCA 2301941 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || |||||||| || || ||| |||||| || | || ||||| Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTC 2301897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897934384440