Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 134 2e-26 seq1 95.1 2e-14 >seq4 Length=31929104 Score = 134 bits (148), Expect = 2e-26 Identities = 256/376 (68%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || ||||||||||| || ||||| || |||| |||| ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | ||| ||||||| || |||||||| | ||||||||| | ||| ||||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAG 2301940 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33472 | ||||| || ||||| || |||||| || || || | || | || | | | Sbjct 2301939 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 2301880 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| || ||||| ||||| ||||| ||||| |||| ||||| | Sbjct 2301879 CGTC---GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGA 2301823 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| | ||||| ||| ||||| || || || | ||||| || | | |||| Sbjct 2301822 CGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGAC 2301763 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||||| || || || || ||||| ||||| || || || || ||||| | ||||| Sbjct 2301762 TATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCT 2301703 Query 33653 CGGTAATCTGTACTTC 33668 ||| || || ||||| Sbjct 2301702 CGGCGATTTGGACTTC 2301687 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| ||||| ||||| | | ||| | | |||||| | |||||| | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||| ||||| || | || |||||| || || || || || Sbjct 6395602 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 6395648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943843871960