Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq5 98.7 1e-15 seq9 93.3 4e-14 seq1 91.5 1e-13 >seq2 Length=41236440 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || | || ||| | || | ||||| | Sbjct 32406708 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCCTCC 32406649 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 32406648 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAA 32406589 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || |||||| || || ||||| | | | | | |||||||||| Sbjct 32406588 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTAGCCGACTATAAC 32406529 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||||||||||||| Sbjct 32406528 ATTCAGAAGGAGTCCACCCTCCATCTGGTCCT 32406497 >seq5 Length=39371879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || || ||| | |||||| ||||| | || | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| || || ||||||||||| || |||||||| ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || | ||||| | || ||| ||||| || || || | | || | || || ||||| Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCG-TACTTTGGCTGATTATAA 2688706 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| |||| || ||||| || || | ||||| Sbjct 2688705 TATCCAAAAGGAGTCGACTCTCCACCTTGTCCTCAGGCTCCGTGGAGG 2688658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || ||||||||| | |||||| | || | ||| Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | ||||| ||||||| || || ||||| || || || ||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||| || || | | ||| || ||| | || |||| || | | | ||| || |||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGA-CTTTAGCTGATTATA 2688251 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||| ||||| ||||| |||| || ||||| Sbjct 2688250 ACATTCAGAAAGAGTCTACCCTCCACCTTGTCCT 2688217 >seq9 Length=38630433 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-A 26822 |||| ||||| | || || ||||| |||| || ||| | |||||| |||| | || | Sbjct 27803031 ACAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGA 27803090 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | | ||||||||||| | ||||| ||||| ||||| ||||| || ||||| Sbjct 27803091 GCTCA-GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCT 27803149 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 |||||||| | | || | || |||||| ||||| ||||| | ||| | | || Sbjct 27803150 GATCAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGAT 27803209 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| ||||| ||| |||| ||||| || Sbjct 27803210 TACAATATCCAAAAGGAATCGACTCTCCACCTGGTACT 27803247 >seq1 Length=37323695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| | || | ||||| Sbjct 32435917 AAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTCGAATCC 32435858 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| ||||| || || || ||| Sbjct 32435857 TCTGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGAT 32435798 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || |||||| || |||||||| | | | | | |||||| Sbjct 32435797 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTAGCCGACTAC 32435738 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || ||||| || | || || ||||| Sbjct 32435737 AATATTCAGAAGGAATCCACCCTTCACCTCGTCCT 32435703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659821206320