Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 3e-15 >seq4 Length=31929104 Score = 98.7 bits (108), Expect = 3e-15 Identities = 336/514 (65%), Gaps = 25/514 (5%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT---GAACGTTCATTCGCGGAACGT 22494 || || || || |||||| |||||||||| || | ||| || |||| ||||| Sbjct 2301846 AAGAAAGCCGAGTGGGCGTTGAAATGGATCGACGGTTCGGAAACTT---TCGCCGAACGG 2301902 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || || || |||||| || ||||| |||||||| |||||| || || || || ||| Sbjct 2301903 CTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTT 2301962 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| ||||||| || | | ||||| || |||| || || || |||||||| ||| Sbjct 2301963 TGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGA 2302022 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA 22674 ||||| ||||| ||| |||||| || || |||| || | || | | ||| || Sbjct 2302023 GATGAAGGTCTCCATTGCGATTTCGCTTGCTTGCTGTA-CTCCCTCCTC-CGGTCA-AAG 2302079 Query 22675 CTTCCATATGAAACTGTACTTGATA---TTATT-ACAAATGCAGTTGAACTTGAACGTCT 22730 || | || | | ||| | ||| | | | ||||| || | || | Sbjct 2302080 CTGAGCGAAGA----GCGCGTGAGAGGGTTAGTGAGGGACGCAGTGGATATAGAGAGGGA 2302135 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGT----ATCAATGCCGAATCAATGA 22786 ||| | || || || | || || | ||||||| || || | || |||| Sbjct 2302136 GTTTGTATGTGATGCTCTGCC-GTGCG---CATTGGTTGGGATGAACGGAGAGCTGATGA 2302191 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATT 22846 || || || | || || |||||||| | || | | || || | ||| | Sbjct 2302192 GTCAGTACATCGAGTTCGTCGCAGATCGGTTGTTGGGAGCGTTGGGGTACGGGAAGATGT 2302251 Query 22847 ATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATT 22906 | || || | ||| || ||||| ||||||||||| ||||| | |||| || || |||| Sbjct 2302252 ACAATGTGGCTAACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGTAAAACTAATT 2302311 Query 22907 TCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||||||| ||||||||||| || ||||| ||||| Sbjct 2302312 TCTTCGAGAAAAGAGTTGGAGAGTACCAGAAAGC 2302345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346402637042