Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq5 98.7 9e-16 seq2 95.1 1e-14 seq1 91.5 1e-13 seq7 86.0 5e-12 >seq9 Length=38630433 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | || || ||||| |||| || ||| | || ||| |||| || ||| Sbjct 27803031 ACAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGA 27803090 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | ||||||||||| | ||||| ||||| ||||| |||||||| ||||| | Sbjct 27803091 GCTCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTG 27803150 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||||||| | |||| | || |||||||||||| ||||| | | ||| | | |||| Sbjct 27803151 ATCAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATT 27803210 Query 24166 ATAACATTCAAAAAGAATCTAC 24187 | || || ||||| ||||| || Sbjct 27803211 ACAATATCCAAAAGGAATCGAC 27803232 >seq5 Length=39371879 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || ||| | || ||| ||||||||||| | Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || || |||||||||||||| |||||||| ||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| || || || || || | | | || | || |||||||| Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCG-TACTTTGGCTGATTATAA 2688706 Query 24170 CATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 2688705 TATCCAAAAGGAGTCGAC 2688688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || ||||||||| | || ||| | || || || Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| ||||||| || || ||||| || || || ||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || || || || | | ||| |||||| | || |||| || | | | ||| ||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGA-CTTTAGCTGATTATA 2688251 Query 24169 ACATTCAAAAAGAATCTAC 24187 ||||||| ||||| ||||| Sbjct 2688250 ACATTCAGAAAGAGTCTAC 2688232 >seq2 Length=41236440 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| | || ||||| || | Sbjct 32406708 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCCTCC 32406649 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 32406648 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAA 32406589 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||| || ||||| | | | | | | ||| |||||| Sbjct 32406588 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGTACCCTAGCCGACTATAAC 32406529 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 32406528 ATTCAGAAGGAGTCCAC 32406512 >seq1 Length=37323695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || ||||||||||| ||||| ||||| ||||| |||||| | || |||||||| ||| Sbjct 8434106 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 8434165 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | | |||| || ||||||||||| ||||| || || ||| |||| | || || Sbjct 8434166 GATGGCCG-AACGCTTGCTGATTATAACATCCAAAAGGAGTCCACACTTCACCTTGTTTT 8434224 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 8434225 GAGGCTTAGGGGAGGAACTATGAT 8434248 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23980 AGCCAAA-CAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGA 24037 |||||| |||| ||||| | || || ||||| |||| || || | || ||| | || Sbjct 32435927 AGCCAACGCAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGA 32435868 Query 24038 AGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCAT 24097 ||||| || ||||||||||| | |||||| ||||| ||||| ||||| || Sbjct 32435867 GGTCGAATCCTCTGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAAT 32435808 Query 24098 ACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGT 24157 || || ||||| || | || || | || ||||||||| |||||||| | | | | | | Sbjct 32435807 CCCACCGGATCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTT 32435748 Query 24158 CAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||| || || ||||| || ||||| || |||| Sbjct 32435747 AGCCGACTACAATATTCAGAAGGAATCCACCCTTCA 32435712 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| |||| || | || || ||| | Sbjct 11148010 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCG 11148069 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| || ||||| || || || || ||||| Sbjct 11148070 GACACTATTGACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCAG 11148129 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||| |||||| | || || ||||| ||||||| || | || | || ||||||| Sbjct 11148130 CAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTT--GCTGATTATA 11148187 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||| || || || |||| || || Sbjct 11148188 ACATTCAAAAGGAGTCAACCCTTCACTTGGT 11148218 >seq7 Length=21614486 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | |||||||| | |||||| | ||||| ||| Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 2896172 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2896113 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | |||||| || | || |||| || ||| || ||||| || Sbjct 2896112 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAG-GACGCTTGCAGATTACAA 2896054 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | || || ||| Sbjct 2896053 TATCCAAAAGGAGTCAACCCTCCACTTGGTG 2896023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933741626805