Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 seq1 93.3 4e-14 seq7 87.8 2e-12 >seq5 Length=39371879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCC 115342 |||||| ||||||||||| || | || |||||||| || ||| | || ||| || | Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | ||| | || || || || ||| ||| ||||| ||||| ||||| || Sbjct 2688369 GGATACAATC---GATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGA 2688313 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||||| ||||| | ||| || || ||||| || |||| | || | || ||||| Sbjct 2688312 TCAGCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTA 2688253 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||||||| ||||||||||| Sbjct 2688252 TAACATTCAGAAAGAGTCTAC 2688232 >seq1 Length=37323695 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| || ||||| || || | || ||| | Sbjct 11148010 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCG 11148069 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || ||| |||||||| || |||| ||||| Sbjct 11148070 GACACTATTG-ACAATGTCAAGGCTAAGATTCAGGATAAAGAGGGTATCCCACCAGATCA 11148128 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || |||||| | ||||||| | || | || |||||||| Sbjct 11148129 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 11148188 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| ||||| || Sbjct 11148189 CATTCAAAAGGAGTCAAC 11148206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| || || ||| | || ||| | Sbjct 11147782 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 11147841 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || ||| ||| |||| || ||| || || || || ||||| |||| |||||| Sbjct 11147842 GATACTATTG-ACAATGTTAAAGCGAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 11147900 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | ||| |||||||| | ||||| | ||| | || || ||||| Sbjct 11147901 ACAAAGACTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTATAA 11147960 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || || ||||| || | ||| ||||| Sbjct 11147961 TATCCAGAAGGAGTCCACCCTTCATTTGGTG 11147991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| ||||||||| || | |||| ||| || || ||| | ||| Sbjct 8434106 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 8434165 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || ||||||||||| ||||| ||||| || | || | || ||| Sbjct 8434166 GATGGCCGAACGCTTGCTGATTATAACATCCAAAAGGAGTCCACACTTCACCTTGTTTTG 8434225 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 8434226 AGGCTTAGGGGAGGAA 8434241 >seq7 Length=21614486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| ||||| || |||||| | ||| ||| Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || || ||||| |||||| || || || || ||||| |||| ||||| Sbjct 2896172 GATACCATT-GACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCA 2896114 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| |||||||| || || |||| | || | || ||||| || Sbjct 2896113 ACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAA 2896054 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||| ||||| || | || ||||| || | |||| || |||| Sbjct 2896053 TATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGAA 2896004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || ||||| ||||| || |||||| | ||| ||| Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || || ||||| |||||| || || || || ||||| |||| ||||| Sbjct 2883182 GATACCATT-GACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCA 2883124 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| |||||||| || || |||| | || | || ||||| || Sbjct 2883123 ACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAA 2883064 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||| ||||| || | || ||||| || | |||| || |||| Sbjct 2883063 TATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGGAA 2883014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || ||||| |||| ||||||||| ||| | |||| ||| |||||||| | ||| Sbjct 12529262 GACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAA 12529321 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| ||||| ||||| ||| | || |||| ||| Sbjct 12529322 GATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTTG 12529381 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 12529382 AGGCTTAGGGGAGGAA 12529397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || ||||| |||| ||||||||| ||| | |||| ||| |||||||| | ||| Sbjct 12547888 GACAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAA 12547947 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| ||||| ||||| ||| | || |||| ||| Sbjct 12547948 GATGGTTGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTTG 12548007 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 12548008 AGGCTTAGGGGAGGAA 12548023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| ||||||||| ||| | |||| ||| |||||||| | || Sbjct 12606960 GATAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAGCTTGAG 12607019 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| ||||| ||||| ||| | || |||| ||| Sbjct 12607020 GATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACTTGGTTTTG 12607079 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 12607080 AGGCTTAGGGGAGGAA 12607095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341765747720