Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq1 98.7 1e-15 seq8 82.4 1e-10 >seq4 Length=31929104 Score = 145 bits (160), Expect = 1e-29 Identities = 263/378 (70%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || ||||||||||| || ||||| || |||| ||||| ||||| || | Sbjct 2302059 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGA 2302000 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || |||| Sbjct 2301999 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAG-CGCAGAAACTTCCA 2301941 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828 || |||||||| ||||| || ||||| || || || | || | || | | Sbjct 2301940 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 2301881 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| || ||||| ||||| ||||| ||||| |||| ||| || Sbjct 2301880 CCGTC---GATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCG 2301824 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | || | ||||| ||| ||||| || || || | || || |||| | ||| Sbjct 2301823 ACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGA 2301764 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGC 33007 |||||||| || || || || ||||| ||||| ||||| || || ||||| ||| | ||| Sbjct 2301763 CTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGC 2301705 Query 33008 CTCGGTAATCTGTACTTC 33025 ||||| || || ||||| Sbjct 2301704 CTCGGCGATTTGGACTTC 2301687 >seq1 Length=37323695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || |||||||| ||||| |||||| ||| ||| | | | Sbjct 6395422 GTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 6395481 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 6395482 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 6395541 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| ||||| ||||| | | ||| | | |||||| | |||||| | || | Sbjct 6395542 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCAAGG 6395601 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||| ||||| || | || |||||| || || || || || Sbjct 6395602 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 6395648 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 6395078 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 6395137 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||||||||| || || ||||| || || |||| |||||||| || || Sbjct 6395138 ATTAGATGTACCATTTGTTCCACGAATATAACTCCCTGTGGCTCGAATATTTTGAACAGA 6395197 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 6395198 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 6395257 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 || || ||||||||||| |||| Sbjct 6395258 TCCTTCAATACTATCATCTTTCAT 6395281 >seq8 Length=19593398 Score = 82.4 bits (90), Expect = 1e-10 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 62972 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031 || ||| | |||||||||| || ||||| || |||||| || | || ||| || | Sbjct 16108495 TCATATTGGGTATACAATCTTTTAAACTCTTCGCCCCAACAATCAGCTAGACCATGAGCT 16108436 Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 ||| ||||| | ||| ||||| | ||| ||| | | || | || ||| || || ||| Sbjct 16108435 TCAGAAGGACAGAACAAGGACCATTTTCCATCACCTTGAACCCTTTCCATGAAAAGGTCA 16108376 Query 63092 GGAATCCAAAGAGCTATAAATAGATCTC 63119 |||| ||||||||| ||||||||||| Sbjct 16108375 GGAACCCAAAGAGCCTAAAATAGATCTC 16108348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628586307600