Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 seq7 120 3e-22 seq9 109 5e-19 seq6 109 5e-19 seq1 91.5 1e-13 >seq5 Length=39371879 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||||||||| ||| ||||||| ||||||| ||| || Sbjct 2688884 ATGCAAATCTTTGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2688825 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||||||||| || || || |||||| Sbjct 2688824 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCCGACCAA 2688765 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || ||||| ||||| | || || | || ||| ||| ||||| ||| Sbjct 2688764 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAT 2688705 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || | || || ||||| | ||||| Sbjct 2688704 ATCCAAAAGGAGTCGACTCTCCACCTTGTCCTCAGGCTCCGTGGAGG 2688658 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||||||||||| ||||||| ||||||||||| || Sbjct 2689112 ATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATCACCCTCGAAGTGGAGAGTTCC 2689053 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| |||||||| ||||| ||||| Sbjct 2689052 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCAG 2688993 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| ||||| | ||||| | ||| || ||| ||||| || Sbjct 2688992 CAAAGGCTCATCTTCGCCGGGAAACAGCTCGAAGACGGTCGTACCTTGGCGGATTATAAC 2688933 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 2688932 ATCCAGAAGGAGTCAACTCTCCA 2688910 >seq7 Length=21614486 Score = 120 bits (132), Expect = 3e-22 Identities = 156/212 (74%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || | || || || ||||||| |||| ||||| Sbjct 2883703 AACAGATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAA 2883644 Query 25054 CGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||||||||||| || |||| |||| || | ||| ||||| |||||||| ||| Sbjct 2883643 GCTCTGACACTATTGATAATGTCA---AAGCTAAGATTCAA-GACAAGGAAGGGATCCCA 2883588 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||||||| || |||| ||||| || ||||| |||| |||| ||||| | | Sbjct 2883587 CCAGACCAACAGAGGCTTATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACCCTTGCT 2883528 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || || || ||||| || || Sbjct 2883527 GATTACAATATCCAGAAGGAGTCCACCCTCCA 2883496 Score = 116 bits (128), Expect = 3e-21 Identities = 155/212 (73%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || | || || || ||||||| |||| ||||| Sbjct 2896693 AACAGATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTGGAAA 2896634 Query 25054 CGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||||||||||| || |||| |||| || | || ||||| |||||||| ||| Sbjct 2896633 GCTCTGACACTATTGATAATGTCA---AAGCCAAGATCCAA-GACAAGGAAGGGATCCCA 2896578 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || ||||||||| || |||| ||||| || ||||| |||| |||| ||||| | | Sbjct 2896577 CCAGACCAACAGAGGCTTATCTTTGCTGGTAAACAGCTAGAGGATGGCCGCACCCTTGCT 2896518 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| || || || ||||| || || Sbjct 2896517 GATTACAATATCCAGAAGGAGTCCACCCTCCA 2896486 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || ||||| |||||| ||||||| | || |||||| || Sbjct 2896005 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2895946 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || || || || |||| || | || || || || || || |||||||| Sbjct 2895945 TGACACAATTGA--CAATGTCAAAGCCAAGATCCAA-GATAAGGAGGGTATCCCACCTGA 2895889 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| || | |||||||| || || || | ||||||| | || | | || || Sbjct 2895888 CCAACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGGAGGACACTTGCAGACTA 2895829 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || ||||| || | | || |||||||| Sbjct 2895828 TAACATCCAAAAGGAGTCAACCCTGCATTTGGTCTTGCGCCTTAGAGGAGG 2895778 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || ||||| |||||| ||||||| | || |||||| || Sbjct 2883015 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 2882956 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || | | |||| || | || || || || || || |||||||||| Sbjct 2882955 TGACACAATTGACAACGTTAAAGCCAAGATCCAA-GATAAGGAGGGTATCCCACCTGACC 2882897 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| || | |||||||| || || || | || |||| | || | | || || | Sbjct 2882896 AACAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTTGCAGACTATA 2882837 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| || || || || ||||| || | | || |||||||| Sbjct 2882836 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTGAGAGGAGG 2882788 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | || || | ||||| ||| ||| Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || |||| || | || ||||| ||||| || || || || Sbjct 2883182 GATACCATTGA--CAATGTAAAAGCTAAGATCCAG-GACAAGGAAGGTATCCCTCCAGAT 2883126 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || |||||||||||||| || || |||| | || | | |||||| Sbjct 2883125 CAACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTAC 2883066 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || || || ||||| Sbjct 2883065 AATATCCAAAAGGAGTCAACCCTCCACTTGGTGCT 2883031 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || ||| | || || ||| ||||||| | || |||||| || Sbjct 2896460 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCG 2896401 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| ||||| || || || ||||| ||||| Sbjct 2896400 GATACCATCGATAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGTATCCCACCGGACCA 2896342 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||||||||| ||||| | ||||||| | || | | || || || Sbjct 2896341 GCAGAGGTTAATTTTTGCCGGAAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAA 2896282 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || || ||||| ||| | |||| Sbjct 2896281 CATTCAGAAGGAGTCAACCCTCCATTTGGTGTTGCGGCT 2896243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || || | || || | ||||| ||| ||| Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || |||| || | || ||||| ||||| || || || || Sbjct 2896172 GATACCATTGA--CAATGTAAAAGCTAAGATCCAG-GACAAGGAAGGTATCCCTCCAGAT 2896116 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| || | || |||||||||||||| || || |||| | || | | |||||| Sbjct 2896115 CAACAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTAC 2896056 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || || || ||||| Sbjct 2896055 AATATCCAAAAGGAGTCAACCCTCCACTTGGTGCT 2896021 >seq9 Length=38630433 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| ||| ||||||| |||| |||||| || Sbjct 27803036 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGCTCA 27803095 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| ||||| ||| Sbjct 27803096 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAA 27803155 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | ||||| | || || | | ||||||||| Sbjct 27803156 CAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTACAAT 27803215 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 27803216 ATCCAAAAGGAATCGACTCTCCA 27803238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | || || | || |||||| ||| Sbjct 27803720 ATGCAGATCTTCGTGAAGACGCTGACTGGAAAGACGATTACGCTTGAGGTGGAGAGTTCT 27803779 Query 25059 GACACTATCGAGTCAC-TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | || ||||| | |||| ||| || || || |||||||||||||| | Sbjct 27803780 GATACAATCGA-TAACGTGAAGGCGAAAATTCAA-GATAAGGAGGGGATTCCACCTGATC 27803837 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | ||||| || || || ||||| || |||| || ||| | | ||||||| Sbjct 27803838 AGCAGAGGCTCATTTTCGCTGGGAAGCAATTGGAGGATGGGCGTACTCTTGCAGATTACA 27803897 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || || || || || Sbjct 27803898 ACATCCAGAAGGAGTCTACCCTTCA 27803922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| | ||||| || ||| Sbjct 27803264 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATCACTCTTGAAGTCGAAAGCTCT 27803323 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || |||||| Sbjct 27803324 GACACGATCGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAA 27803383 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | ||||| ||| || |||||| Sbjct 27803384 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCGGACTACAAT 27803443 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || || | ||||| ||||| | ||||| Sbjct 27803444 ATCCAGAAGGAATCAACCCTTCACCTTGTGCTCAGGCTGCGCGGAGG 27803490 >seq6 Length=26303135 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || ||| |||| || | || |||||| || Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| |||| | ||| ||||| |||||||||||||| || || Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAGATTCAG-GACAAGGAAGGGATTCCACCAGATCA 25054451 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || || ||||| ||||||| | ||| ||| |||||||| Sbjct 25054452 GCAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAA 25054511 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 |||||| || || ||||| || || Sbjct 25054512 TATTCAGAAGGAGTCCACCCTTCA 25054535 >seq1 Length=37323695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 |||| || ||||| || || || || || | || || || |||| || | || || Sbjct 32435923 AACGCAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTC 32435864 Query 25050 GAGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || || |||||||| ||||| || || |||| || | || ||||| ||||| || Sbjct 32435863 GAATCCTCTGACACCATCGA--CAATGTCAAAGCCAAGATCCAG-GACAAGGAAGGAATC 32435807 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||| || || || || | || || |||||||| || | ||||| | ||||| | Sbjct 32435806 CCACCGGATCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTA 32435747 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||| ||||||||||| || |||||||| || || Sbjct 32435746 GCCGACTACAATATTCAGAAGGAATCCACCCTTCA 32435712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325723809265