Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq431 607 9e-169 >seq431 Length=160619 Score = 607 bits (672), Expect = 9e-169 Identities = 734/992 (74%), Gaps = 8/992 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | ||| || | ||||||||||| | || |||||||| | Sbjct 1565 CTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 1506 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || | || ||| | || || | Sbjct 1505 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTC 1447 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || ||||| || || | || |||||| | || || |||| Sbjct 1446 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 1387 Query 166232 ACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCC 166289 | || || |||||||| || | || || || || || || ||| | ||||| || || Sbjct 1386 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 1329 Query 166290 CATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGT 166349 ||||||||||| ||||| ||||||||||| | || || || ||||||| |||| | Sbjct 1328 GATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAAT 1269 Query 166350 AGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTA 166409 || | |||||| | | || | | |||||||||||||| |||||| | || Sbjct 1268 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1209 Query 166410 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATC 166469 ||| || |||||||| |||||||| || ||||| || || ||||||||||| || | Sbjct 1208 CCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGC 1149 Query 166470 CGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGG 166529 ||| || ||| || ||||||| |||||||||| ||| ||||| | ||||| || || Sbjct 1148 CGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 1089 Query 166530 TATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCA 166589 ||| ||| || ||||||| |||| |||| ||||| || || ||||||||||| ||||| Sbjct 1088 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCA 1029 Query 166590 CCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCA 166649 ||| || || ||| | || ||||| ||||||||||| || || || ||| || ||||| Sbjct 1028 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 969 Query 166650 CGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACT 166708 || | || || || | | | | || | || ||||| |||| ||| ||| || Sbjct 968 TGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 910 Query 166709 ATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACT 166768 | ||||||| || |||||||| ||||| || || || ||||| |||||||||||||| | Sbjct 909 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATT 850 Query 166769 TCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCC 166828 | || || ||||||||||||| ||| |||||||| ||||| || | |||||||||| Sbjct 849 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCC 790 Query 166829 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCAT 166888 | || || |||||||| || ||||||||||| || ||| | ||| ||||||| ||||| | Sbjct 789 TAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTT 730 Query 166889 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 166948 ||||||| || |||||||| |||||||| || | | ||| |||| |||||||| | | Sbjct 729 TCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 670 Query 166949 ACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTA 167008 | || ||||| ||| | | ||||||||| || ||||||||||| ||||| || |||| Sbjct 669 ATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 610 Query 167009 ATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 ||||||| ||||||||||| || || |||||| Sbjct 609 ATGCTCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 520 bits (576), Expect = 1e-142 Identities = 728/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || ||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| |||| || || || ||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || |||||||| || || ||||| |||| | ||| ||| ||| ||||| Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCC---AGTTCCTATTTGGAAGGCTGC-AATTT 34928 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 34929 CTTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATG 34988 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | ||||| || | || || || ||| | || Sbjct 34989 GGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATT 35048 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || |||||||| || || | || ||||| |||||| | || |||||||| | Sbjct 35049 TGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGC 35108 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 || || | || ||||| ||||| || || || |||||||| |||||||| || Sbjct 35109 GCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTT 35168 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || || || ||||||||||||| || || Sbjct 35169 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTT 35228 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| ||||| |||||| ||||| | || || | || || || ||||| ||||| | Sbjct 35229 TGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATT 35288 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||||||||| ||| | | |||| ||| |||| | || || Sbjct 35289 GAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTAT 35348 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||||| ||| || || |||||| | | |||||||||||| ||||| || ||| Sbjct 35349 TCATGGTGCTACCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 35408 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || || Sbjct 35409 TGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 35468 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||| ||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 35469 GTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 35528 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | ||||||| || || || || Sbjct 35529 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCT 35588 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 ||||| |||||||| || || |||||| | | ||||| || ||||| || ||||| || Sbjct 35589 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 35648 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||| || ||||| || || | || || || | ||||| |||||||| | ||| Sbjct 35649 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGA 35708 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 35709 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567228944037600