Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 219 5e-52 seq8 102 9e-17 seq1 93.3 5e-14 seq3 89.7 6e-13 seq5 86.0 7e-12 seq9 84.2 2e-11 seq2 82.4 9e-11 >seq4 Length=31929104 Score = 219 bits (242), Expect = 5e-52 Identities = 412/600 (69%), Gaps = 12/600 (2%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| || || ||| ||| | |||||| |||||||| || ||||| || Sbjct 2302061 GTACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGA 2302002 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| ||||| || || | | || || || || | ||||||||| | ||| ||||| | Sbjct 2302001 GAAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATAGC-GCAGAAACTTC 2301943 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || || ||||||||| ||||| || | | |||||||| ||| || | | Sbjct 2301942 CAGAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCG 2301883 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | | ||||||||| || ||||| |||||||| || | ||| || | ||||| Sbjct 2301882 AA---CCGTCGATCCATTTCAACGCCCACTCGGCTTTCTTAGCCACACACGGCACTGTTT 2301826 Query 93321 CGATAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 ||| |||| || || || | | |||| || || ||||| || || | | Sbjct 2301825 CGACGGCGTGGAAGAGCCGGTTCTTT---TCGTTGGAGTCCTTGATGTAAGTTTCAAGGA 2301769 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| |||||| || || |||| ||| || || || |||||||| || ||||| | Sbjct 2301768 GGAGACTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCAC 2301709 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||| || | ||| || ||||| | || | | |||||||||| ||| || | Sbjct 2301708 GAGCCTCGGCGATTTGGACTTCCTTCATGAACCGAACGGCGAGATTTTCGAGGACGATGC 2301649 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||||||| ||||| || || || | | || | || || || || |||| ||| Sbjct 2301648 CATCGGAGGCTGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCATCGGTAA 2301589 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | | ||||| | | |||||| || ||||||||||| ||| | |||||||| || | Sbjct 2301588 GAGTTTCCCAGTGGCGTAGATCCGACGAGAGATCGACTTCCTCGGCGGTCCAAAAGGAGG 2301529 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| ||||| |||||||| ||||||| || | ||||| || || || ||| |||||| Sbjct 2301528 CTTCGGCTTTCTTGTACATTTCCCATACTTCCGGGTATTGGATCGGGAACATG-CAAAAC 2301470 >seq8 Length=19593398 Score = 102 bits (112), Expect = 9e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 2041404 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 2041345 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| ||||||||||| Sbjct 2041344 TGGGTTCAAATCCCACTCCTGACAAATT 2041317 >seq1 Length=37323695 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 4999706 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 4999647 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 4999646 TGGGTTCAAATCCCACTTCTGACAA 4999622 >seq3 Length=36364294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321 || || ||| |||||||||||||||||||||||||||||| | |||||| || | | Sbjct 649499 TAAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 649556 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || |||||| ||| |||||| || Sbjct 649557 CGTGGGTTCAAATCCCACAGCTGTCAAATTTTT 649589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 29075829 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 29075772 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 29075771 GGCGTGGGTTCAAATCCCACTTCTGACA 29075744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 30279913 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 30279856 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 30279855 GGGTTCAAATCCCACAGCTGTCAAA 30279831 >seq5 Length=39371879 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 6382716 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 6382659 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||| || |||||| ||| || ||| ||| Sbjct 6382658 GGGTTCAAATCCCACAGCTGTCATATTTTTA 6382628 >seq9 Length=38630433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 37228979 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 37228922 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 37228921 GCGTGGGTTCAAATCCCACTTCTGACAA 37228894 >seq2 Length=41236440 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 3586275 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 3586218 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 3586217 CGTGGGTTCAAATCCCACTTCTGACAA 3586191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857799912440