Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq5 91.5 1e-13 seq6 89.7 4e-13 seq1 89.7 4e-13 >seq7 Length=21614486 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | || || || || |||||| ||||| || Sbjct 2896232 ATGCAAATTTTTGTGAAAACTCTCACTGGAAAGACAATTACCTTGGAAGTTGAGAGTTCT 2896173 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | |||||| || || ||||| ||||| | || |||||| Sbjct 2896172 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2896113 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| |||||||| ||||| ||| | || | || ||||| ||| Sbjct 2896112 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2896053 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| |||||||||| ||||| Sbjct 2896052 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 2896006 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || | || || || || |||||| ||||| || Sbjct 2883242 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 2883183 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | | |||||| || || ||||| ||||| | || |||||| Sbjct 2883182 GATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 2883123 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| |||||||| ||||| ||| | || | || ||||| ||| Sbjct 2883122 CAGAGGCTGATATTTGCCGGCAAACAGTTGGAGGATGGGAGGACGCTTGCAGATTACAAT 2883063 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || || ||| |||||||||| ||||| Sbjct 2883062 ATCCAAAAGGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGTGG 2883016 >seq5 Length=39371879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||||||||| || |||| || ||||| || ||| |||| |||| Sbjct 2688429 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2688370 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || ||| ||| || || ||||| | ||| ||||| Sbjct 2688369 GGATACAATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2688310 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| || || |||||||| ||| | ||| | || |||||||| Sbjct 2688309 GCAAAGGCTTATCTTTGCCGGGAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2688250 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || || | || | ||||| || ||||| Sbjct 2688249 CATTCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTCCGTGGTGG 2688202 >seq6 Length=26303135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || || |||| || ||||||||||| |||| ||| | Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 25054452 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||| | || | ||| || || |||||||||||| | ||| |||| ||||| ||| Sbjct 25054453 CAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAAT 25054512 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || ||||| || || ||||| Sbjct 25054513 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCGCCTTCGTGGTGG 25054559 >seq1 Length=37323695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||| ||||| ||| | || || | Sbjct 11147554 ATGCAAATCTTTGTGAAAACCCTAACAGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 11147613 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || || || || ||||| ||||| | || || || Sbjct 11147614 GATACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 11147673 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||||| ||| |||||||| | |||||| | ||| | || || |||||| Sbjct 11147674 CAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGTCGAACCCTAGCTGACTATAAT 11147733 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || ||||| ||| | ||||| || ||||| Sbjct 11147734 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCCGTGGTGG 11147780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || || || || ||| |||| || | Sbjct 11147782 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 11147841 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || ||| || || ||||| ||||| | || |||||| Sbjct 11147842 GATACTATTGACAATGTTAAAGCGAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCAA 11147901 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| ||||| | ||| |||||||| | ||||| | || | || || |||||| Sbjct 11147902 CAAAGACTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTATAAT 11147961 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || ||||| ||| | ||||| || ||||||| Sbjct 11147962 ATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGTCTTCGAGGTGGCA 11148010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423037777850200