Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10 143 5e-29 seq9 93.3 9e-14 seq8 93.3 9e-14 seq2 93.3 9e-14 seq1 93.3 9e-14 seq6 91.5 3e-13 seq5 91.5 3e-13 seq3 91.5 3e-13 >seq10 Length=21822658 Score = 143 bits (158), Expect = 5e-29 Identities = 207/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||| ||||| | |||||||| ||||| || || | |||| | | | || ||||| Sbjct 2025993 TGAATTCATTAATAAGGAGCTTATTCTGTTTTCCATGGCTGATCTTCAAAGGTCAATTCC 2026052 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 || | |||||||| ||||| || | |||||||| ||| | |||||| | Sbjct 2026053 TTCAATGATTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTTTGTTCTTTCAAGAG 2026112 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | || ||||| ||||| ||||| ||||| |||||||| || || ||||| Sbjct 2026113 GAATTTTGTAAAAGAAGCAAAGGTTGCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGC 2026172 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| |||||||||||||| || | ||||| || |||||||| || | ||| Sbjct 2026173 TTACCATCATGGTGAGCAGAGTCTTGCTAGTACAATTGTTGGAATGGCACAAGATTTTGT 2026232 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||||||||||||| ||| | || | || ||||| ||||| ||||| Sbjct 2026233 GGGCAGTAACAACATAAACCTTCTCCATCCAGGTGGTCAATTTGGCACTCGT 2026284 Score = 96.9 bits (106), Expect = 7e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 2078056 ATAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 2077997 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 2077996 AGCCCCAC 2077989 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 563814 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 563873 Query 142562 GCCCCAC 142568 ||||||| Sbjct 563874 GCCCCAC 563880 >seq9 Length=38630433 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 32001297 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 32001356 Query 142563 CCCCAC 142568 |||||| Sbjct 32001357 CCCCAC 32001362 >seq8 Length=19593398 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 4435589 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4435530 Query 142563 CCCCAC 142568 |||||| Sbjct 4435529 CCCCAC 4435524 >seq2 Length=41236440 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 34684581 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34684522 Query 142563 CCCCAC 142568 |||||| Sbjct 34684521 CCCCAC 34684516 >seq1 Length=37323695 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| || ||||||| || |||||||||||||| Sbjct 35404876 GACAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 35404935 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 35404936 GAGCCCCAC 35404944 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 35002367 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35002308 Query 142564 CCCAC 142568 ||||| Sbjct 35002307 CCCAC 35002303 >seq6 Length=26303135 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 18077685 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18077626 Query 142564 CCCAC 142568 ||||| Sbjct 18077625 CCCAC 18077621 >seq5 Length=39371879 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1100498 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1100557 Query 142564 CCCAC 142568 ||||| Sbjct 1100558 CCCAC 1100562 >seq3 Length=36364294 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 33287200 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33287141 Query 142564 CCCAC 142568 ||||| Sbjct 33287140 CCCAC 33287136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831124092471