Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq7 89.7 4e-13 seq6 82.4 5e-11 >seq1 Length=37323695 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | |||| || || || |||||||||||||| || || ||| Sbjct 11148331 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTTGAA 11148390 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || |||| | || || || ||||| || ||||||||||| ||||| |||| || Sbjct 11148391 GATGGAAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 11148450 Query 22047 CGTTTACGAGGAGG 22060 |||||||| || || Sbjct 11148451 CGTTTACGTGGTGG 11148464 >seq7 Length=21614486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || |||||||| ||| |||| || | || Sbjct 2882786 ATGCAGATATTTGTGAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCA 2882727 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || ||| ||| || || ||||| | ||| | |||| Sbjct 2882726 GACACGATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 2882667 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| || | || ||| ||| |||| || |||||| Sbjct 2882666 CAGAGGTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTCTGGCTGACTACAAT 2882607 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||| || || |||||| Sbjct 2882606 ATCCAGAAGGAGTCCACCCTTCAT 2882583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || ||||| || || |||||||| ||| |||| || | || Sbjct 2895776 ATGCAGATATTTGTCAAGACATTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCA 2895717 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| ||| || || ||||| | ||| | |||| Sbjct 2895716 GACACAATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 2895657 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || | || ||| ||| |||| || |||||| Sbjct 2895656 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCACTCTGGCTGACTACAAT 2895597 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||| || || |||||| Sbjct 2895596 ATCCAGAAGGAGTCCACCCTTCAT 2895573 >seq6 Length=26303135 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || | || || ||||||||||| |||| ||| | | Sbjct 25054333 ATGCAGATTTTCGTTAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 25054392 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||| ||| || || || || | || | | || Sbjct 25054393 GATACCATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 25054452 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || ||| | |||||| || ||| |||| ||||||||| Sbjct 25054453 CAAAGGTTGATATTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTGGCTGATTACAAT 25054512 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||||||||| || || ||||| |||| || || Sbjct 25054513 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 25054547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358122918837574