Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq5 109 5e-19 seq9 100 2e-16 seq7 89.7 4e-13 seq6 82.4 6e-11 >seq2 Length=41236440 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||| || ||| | ||||| |||||||| || || || Sbjct 32406512 GTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCG 32406571 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| |||||||||||||| |||||||| ||||| ||||| || Sbjct 32406572 GCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 32406631 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||||||||| |||| ||| | || || || || || ||| Sbjct 32406632 ACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTT 32406691 Query 114366 TTTACAAAAATCTGCATGG 114384 || || || |||||||||| Sbjct 32406692 TTCACGAAGATCTGCATGG 32406710 >seq5 Length=39371879 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | || | || || || ||||| || || ||||| Sbjct 2688655 ATGCCTCCACGGAGCCTGAGGACAAGGTGGAGAGTCGACTCCTTTTGGATATTATAATCA 2688714 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || ||||| || ||| ||||||| ||||||||||| ||| Sbjct 2688715 GCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGA 2688774 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| || || || | | || | ||||||| ||| Sbjct 2688775 GGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCG 2688834 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||||||| |||||| ||||| || ||||| Sbjct 2688835 ACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCAT 2688884 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || |||||||| | ||| | || ||||| ||||| ||||||||||| Sbjct 2688427 ATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCA 2688486 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | || ||||| || || |||||| |||| | || |||||||| || Sbjct 2688487 GCCAAGGTCCTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGT 2688546 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | |||| ||||| | | ||| Sbjct 2688547 GGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCG 2688606 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || || || |||| ||||| ||||| || |||||| || Sbjct 2688607 ACCTCCAGGGTTATAGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCATGCCT 2688660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || ||||||||||| Sbjct 2689111 ATACCGCCACGAAGACGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCC 2689170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCA-GCGTAGATGAGACGCTGTTGGTCCGG 114271 || ||||| ||||| || ||||| ||| ||| ||||||| | || ||||| || Sbjct 2689171 GCCAAGGTACGGCCGTCTTCGAGCTGTTTGCCACGCGAAGATGAGCCTTTGCTGGTCGGG 2689230 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||||| || | | || | |||||||| || Sbjct 2689231 TGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTC 2689290 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || ||||||||||| ||||| || || |||||||| Sbjct 2689291 GACCTCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2689341 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || ||||| ||||| Sbjct 2688883 ATACCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCC 2688942 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| || ||||| || ||| ||||||| | || ||||| || Sbjct 2688943 GCCAAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGT 2689002 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | ||||||| || Sbjct 2689003 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAACTCTCC 2689062 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||||| ||||| || || |||||||| Sbjct 2689063 ACTTCGAGGGTGATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCAT 2689112 >seq9 Length=38630433 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | || | || | || ||||| ||||| || |||||||| Sbjct 27803265 ATGCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCC 27803206 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||| || || ||| |||| | |||||||| || ||| Sbjct 27803205 GCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGA 27803146 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | | || Sbjct 27803145 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCC 27803086 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||||| || ||||| || || |||||||| Sbjct 27803085 ACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 27803036 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| || || || || || || || || || ||| Sbjct 27803460 GTTGATTCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 27803401 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||||||||||||||| ||||| || ||||| ||||| || Sbjct 27803400 GCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTA 27803341 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | |||||| || | || | || |||||||| || ||| Sbjct 27803340 ACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTT 27803281 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 27803280 TTGACGAAGATCTGCATG 27803263 >seq7 Length=21614486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || |||||||| | || || ||| || || ||||||||| Sbjct 2883502 GTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCA 2883561 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||| || || || ||||| ||||| |||||| ||| Sbjct 2883562 GCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTG 2883621 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||| || || | ||| | || ||||| || || ||| Sbjct 2883622 ACATTATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTT 2883681 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2883682 TTCACAAAGATCTGCAT 2883698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || |||||||| | || || ||| || || ||||||||| Sbjct 2896492 GTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCA 2896551 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||| || || || ||||| ||||| ||||| ||| Sbjct 2896552 GCAAAGATAAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTG 2896611 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||| || || | ||| | || ||||| || || ||| Sbjct 2896612 ACATTATCAATAGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTT 2896671 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2896672 TTCACAAAGATCTGCAT 2896688 >seq6 Length=26303135 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || | || | || || || || ||||| |||||||| Sbjct 25054560 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 25054501 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| | |||||| | ||| || ||||| | || | | || || || || || Sbjct 25054500 CAGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTGGTGG 25054441 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||||| || | | |||| ||| || | | || || Sbjct 25054440 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATGGTATCCGAGCTCTCCAC 25054381 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||| || |||||||| || || ||||||||||| Sbjct 25054380 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTAACGAAAATCTGCAT 25054333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132193112772