Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 132 9e-26 >seq4 Length=31929104 Score = 132 bits (146), Expect = 9e-26 Identities = 396/602 (66%), Gaps = 12/602 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| ||| || || || ||| |||||||| Sbjct 2301624 CTCGCCTTCTTCGCAGCCTCCGATGGCATCGTCCTCGAAAATCTCGCCGTTCGGTTCATG 2301683 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || || || | ||||| || ||| ||||| |||||||| || ||||| || || Sbjct 2301684 AAGGAAGTCCAAATCGCCGAGGCTCG-TGCGTTCTATGGCTTCCAAATCGCCATCGAAAA 2301742 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| |||| || || | || |||||| ||| || ||| Sbjct 2301743 TATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACATCAAGGACTCCAACGAAAA 2301802 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| |||| ||| | ||| | || || |||| || | ||||| || || ||||| Sbjct 2301803 GAACCGGCTCTTCCACGCCGTCGAAACAGTGCCGTGTGTGGCTAAGAAAGCCGAGTGGGC 2301862 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | | || |||||||| || | || ||| |||| ||| |||| | || ||| | Sbjct 2301863 GTTGAAATGGATCGACGGTTCGGA---AACTTTCGCCGAACGGCTAATCGCTTTTGCTTG 2301919 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||| || || || |||||||| || ||| | | || || ||| | || || | Sbjct 2301920 CGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTTGGTTAAAAAAGCGCGG 2301979 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| ||| | || ||||||||||| | ||| | || || || || ||| | Sbjct 2301980 GTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAGATGAAGGTCTCCATTG 2302039 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC-CCTCGAAGGAGCGGG 42900 || || || ||| | |||| ||| || |||| || |||| |||| ||||| | Sbjct 2302040 CGATTTCGCTTGCTTGCTGTACTC---CCTCCTCCGGTCAAAGCTGAGCGAA-GAGCGCG 2302095 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | | | | | ||| || ||||| || |||| |||||| | | | ||| Sbjct 2302096 TGAGAGGGTTAGTGAGGGACGCAGTGGATATAGAGAGGGAGTTTGTATGTGATGCTCTG- 2302154 Query 42961 CCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| | |||| || |||||| || || ||| | |||||||| ||| |||||| Sbjct 2302155 CCGTGCGCATTGGTTGGGATGAACGGAGAGCTGATGAGTCAGTACATCGAGTTCGTCGCA 2302214 Query 43020 GA 43021 || Sbjct 2302215 GA 2302216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334112372560