Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 >seq2 Length=41236440 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||||||||||| ||| | || ||||| | ||| ||||||||||| || || Sbjct 4019286 ACCACAAACATGAGCAATCATGCATGTCAAGAGAGCATAAGATGCAATGTTAAATGGCAC 4019227 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 ||||| |||||||| | || | |||||||| ||||| || | ||| |||| ||||| Sbjct 4019226 GCCCAATCCCATGTCAGCAGAGCGCTGATACATTTGACATGATAACTCCCCGTTGGCTAC 4019167 Query 20359 ATAAAATTG 20367 ||| || || Sbjct 4019166 ATAGAACTG 4019158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370422104040