Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 1e-13 seq6 86.0 5e-12 >seq9 Length=38630433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||| || ||||| ||| ||||||||| ||||||||||| | | Sbjct 27803718 CCTCCACGGAGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCG-C 27803660 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| || |||| ||||| ||||| ||||| ||||||| | |||||||||| Sbjct 27803659 AAGGGTCCTGC-CGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCC 27803605 >seq6 Length=26303135 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || |||| ||||| ||||| ||| |||||||||||| |||||||| Sbjct 25054563 GAAACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATC 25054504 Query 33957 TGCCAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 ||| | ||| | | || ||||||||||| || |||||||||| | |||||||| Sbjct 25054503 AGCC-AGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAATATCAACCTTTGCTGATCTG 25054445 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 || | | || |||||| ||| ||| ||||| Sbjct 25054444 GTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAA 25054409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060314305662