Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-13 >seq2 Length=41236440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | | | ||| ||||| ||||| ||||| || || || Sbjct 18386905 ATCAAACCGTCCTGGCCTCAACAAGGCAGAATCAAGAATATCTGCCCGGTTAGTTGCTGC 18386846 Query 10849 GATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 || |||| ||| || || |||| ||||| |||||||| |||||||| || || || Sbjct 18386845 TATTACAATGATACCTGT---GTTACCCTCAAAACCATCCATTTCAGTCAAAAGCTGGTT 18386789 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || || | |||||| ||| | | ||| | | | |||| || || Sbjct 18386788 AAGAGTCTGCTCCCTTTCATCGTTCCCACCACCAATACCAGTTCCTCTTTGCCGTCCAAC 18386729 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 11023 || ||||||||||| | || || ||||| || ||| || ||| |||| ||| Sbjct 18386728 AGCATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGC--CTTCTTGAAG 18386671 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 | ||| || |||| ||| || ||||| ||||||||||| ||||| | | | ||| Sbjct 18386670 AGATCACGAACTCGAGAGGCGCCAACACCAACAAACATTTCAACAAACTCAGAACCTGAA 18386611 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || | || ||| || || | |||||| || || || ||| || || ||||| || Sbjct 18386610 -ATGGAGAAGAATGGCACACCAGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTTCC 18386552 Query 11143 CGTCCCAGG 11151 || ||||| Sbjct 18386551 AGTTCCAGG 18386543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350381757480