Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq7 105 7e-18 seq2 105 7e-18 >seq5 Length=39371879 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || || || || || |||||| |||||| || ||||| |||| Sbjct 2688691 GACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCG 2688750 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||||||||| ||||| || ||||||||||| |||||| || | Sbjct 2688751 AAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACG 2688810 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||| || |||| || | ||||| || |||| |||||| Sbjct 2688811 TTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTG 2688870 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 2688871 ACAAAGATTTGCAT 2688884 >seq7 Length=21614486 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || |||||||| ||||| | | ||||||||||||| ||||| ||||| Sbjct 2882788 CCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCA 2882847 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| || || || || | | | || | | ||||||||| || || Sbjct 2882848 AGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGG 2882907 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || | ||||| |||| | | ||||| | ||||| Sbjct 2882908 ATACCCTCCTTATCTTGGATCTTG-GCTTTAACGTTGT-CAATTGTGTCAGAGCTCTCCA 2882965 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||||||||||| ||||| |||||||||||||| Sbjct 2882966 CCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2883014 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | ||||||||||||| || ||||| || Sbjct 2896006 CCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCA 2896065 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| | ||||| |||| | | || || | |||||| || ||||| Sbjct 2896066 AGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGG 2896125 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || ||||| |||| || | ||| || | ||| || Sbjct 2896126 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTG-TCAATGGTATCAGAACTCTCAAC 2896184 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| |||||||| |||||||| |||||| Sbjct 2896185 TTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCATG 2896233 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | ||||||||||||| || ||||| || Sbjct 2883016 CCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCA 2883075 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| | ||||| |||| | | || || | |||||| || ||||| Sbjct 2883076 AGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGG 2883135 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || ||||| |||| || | ||| || | ||| || Sbjct 2883136 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTG-TCAATGGTATCAGAACTCTCAAC 2883194 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| ||||| || |||||||| |||||| Sbjct 2883195 TTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCATG 2883243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | ||||||||||||| ||||| ||||| | || | | Sbjct 2895790 CGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCA 2895849 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || || | | | || | | ||||||||| || || ||||| || || Sbjct 2895850 TCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTA 2895909 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| || ||| | ||||| | | ||||| | ||||||||| | || | Sbjct 2895910 TCTTGGATCTTGGCTTTGACATTGT-CAATTGTGTCAGAGCTCTCCACCTCCAAAGTGAT 2895968 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| ||||| |||||||||||||| Sbjct 2895969 GGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2896004 >seq2 Length=41236440 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| |||||| | ||||| ||| || || || || |||| Sbjct 32406515 GACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCAAGCTGCTTGCCGGCG 32406574 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||||||||| || ||||| ||||| ||| || || | Sbjct 32406575 AAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 32406634 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||| | || | || ||||| || || ||||| Sbjct 32406635 TTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTC 32406694 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 32406695 ACGAAGATCTGCATGG 32406710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259726386320