Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7 113 3e-20 seq6 113 3e-20 seq5 104 2e-17 seq1 95.1 9e-15 seq9 84.2 2e-11 >seq7 Length=21614486 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || || ||||| || |||||||| Sbjct 2896006 CCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCA 2896065 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | || || || |||||||| || |||||| | |||||| || || Sbjct 2896066 AGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGG 2896125 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || ||||||| | || || ||||| | | || || Sbjct 2896126 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACT 2896185 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || |||||||| |||||||||||||| Sbjct 2896186 TCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || || ||||| || |||||||| Sbjct 2883016 CCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCTGCA 2883075 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | || || || |||||||| || |||||| | |||||| || || Sbjct 2883076 AGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGG 2883135 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || ||||||| | || || ||||| | | || || Sbjct 2883136 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACT 2883195 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || ||||| || |||||||||||||| Sbjct 2883196 TCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| ||||| || || ||||| ||||| || || || | ||| | ||| Sbjct 2895793 AAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCT 2895852 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||| | ||||||||| ||| || || ||||| || Sbjct 2895853 TCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTATCT 2895912 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| ||| | || || || || | || || || || || |||||| Sbjct 2895913 TGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTT 2895972 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||| ||||| |||||||| ||||| Sbjct 2895973 TTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2896004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| ||||| ||||| || || ||||| ||||| || || || | ||| | || Sbjct 2882803 AAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCC 2882862 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||| | ||||||||| ||| || || ||||| || Sbjct 2882863 TCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGGATACCCTCCTTATCT 2882922 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || || || || | || || || || || |||||| Sbjct 2882923 TGGATCTTGGCTTTAACGTTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTT 2882982 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||| ||||| |||||||| ||||| Sbjct 2882983 TTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2883014 >seq6 Length=26303135 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || || |||||||| ||| | || | ||||| ||||| Sbjct 25054535 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATCTTCCAATTGC 25054476 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || ||||| ||||||| | || || || |||||| ||||||||||| ||| ||| Sbjct 25054475 TTCCCAGCAAATATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTT 25054416 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || ||||| | || || || || ||||||||||| ||||| Sbjct 25054415 GCCTTA-ACATTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGT 25054357 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || ||||| ||||| Sbjct 25054356 CAGAGTCTTAACGAAAATCTGCAT 25054333 >seq5 Length=39371879 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGC 15020 || ||||| | ||||||||| || || ||||||||||||||||| || || | ||| | Sbjct 2688442 CTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAG-GTCCTCCC 2688500 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 ||| || | || || |||||| | ||||| || |||||||| ||| || |||||||| Sbjct 2688501 GTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGTGGGATCCCTTCCTT 2688560 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||| || || | || || || || | || || || | ||| || Sbjct 2688561 ATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGGGTTAT 2688620 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||||| ||||| ||||| |||||||| Sbjct 2688621 AGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2688656 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || |||||||| ||||| || ||||| ||||| ||| | | | ||| | || || ||||| Sbjct 2688226 TGGAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAA-AGTCCTCCCATCCTCCAATTG 2688284 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || || || | || | | || || || || ||||||||||| || ||| || Sbjct 2688285 CTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTT 2688344 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | |||| || || ||||| || ||||| || | Sbjct 2688345 TGC-CTTGACATTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAG 2688403 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || |||||||| ||||| Sbjct 2688404 TCAAGGTCTTGACAAAAATCTGCAT 2688428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || ||||| || || ||||| | | | | |||| || | ||| Sbjct 2688682 TGGAGAGTCGACTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGT 2688741 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | |||||||||||| || || ||||| ||||| |||||| Sbjct 2688742 TTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTG 2688801 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| | | || || || | ||| |||||||| || ||| Sbjct 2688802 GCCTTGACGTTGTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTC 2688861 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | |||||| ||||| ||||||||| Sbjct 2688862 AAAGTTTTGACAAAGATTTGCATA 2688885 >seq1 Length=37323695 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| ||||| ||||| || | || | ||||| Sbjct 11148219 AACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTC 11148160 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| ||||| | ||||| | ||| || || ||| || || || || || Sbjct 11148159 AAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCCTCTTTATCCTG 11148100 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || ||||| || | ||||| || || || || ||||| Sbjct 11148099 AATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTACCTCCAAAGTGATCGTTTT 11148040 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| ||||| || ||||| |||||||| Sbjct 11148039 ACCTGTGAGAGTCTTGACAAAGATTTGCAT 11148010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 |||||||||| | | | || ||||||||||| || || || || || || || || | Sbjct 11148010 TGCCACCTCGAAGACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTCAG 11147951 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || || | | ||||||| | ||||||||||| | || | | ||||| || Sbjct 11147950 CT-AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATAAGTCTTTGTTGATCAGGA 11147892 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || |||||||||||||| || || ||| ||| | || |||||||| | || Sbjct 11147891 GGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCTCTCA 11147832 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || || ||||| || || || ||||| ||||||||| Sbjct 11147831 ACCTCCAAGGTGATAGTCTTTCCTGTGAGTGTCTTGACAAAGATTTGCATA 11147781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || || || ||||||||||| || ||||| || || || || | Sbjct 11148464 CCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCG 11148405 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | || |||||||| | || | | || ||||| ||| Sbjct 11148404 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 11148345 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || ||||| || || ||||| || ||| | || || || || | | || || Sbjct 11148344 ATACCCTCCTTATCTTGGATCTTTGCCTTC-ACATTATCAATGGTGTCTGAACTCTCAAC 11148286 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || ||||| || |||||||||||||| Sbjct 11148285 CTCCAATGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTTGCAT 11148238 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || || || || ||||| ||| || || | | ||||||| | || Sbjct 32435712 TGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCTAAGG-TGCGGCCGTCTTCGAGCTG 32435770 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | || | ||| || || || ||| |||||||||||||| || || Sbjct 32435771 CTTGCCGGCGAAGATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTT 32435830 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || || || ||| || |||| ||| ||||| || || || Sbjct 32435831 GGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGT 32435890 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 32435891 TAGGGTTTTGACGAAGATCTGCATCTTTG 32435919 >seq9 Length=38630433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || ||||| || |||||||| || ||| ||||||| | ||| Sbjct 27803238 TGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCAAGTTGC 27803179 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | ||||| |||||||| || ||||| ||||||||||| || ||| Sbjct 27803178 TTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTG 27803119 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || | || || || | ||| |||||||| || || Sbjct 27803118 GCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTGCCGGTT 27803059 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || || || ||||| || Sbjct 27803058 AGGGTTTTCACGAAGATCTGCATCTT 27803033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390122686835