Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 132 4e-26 seq9 109 5e-19 seq7 95.1 1e-14 seq1 93.3 4e-14 >seq5 Length=39371879 Score = 132 bits (146), Expect = 4e-26 Identities = 176/242 (73%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| |||||||| | || || || || || || |||||||||||||||||||| Sbjct 2688655 ATGCCTCCACGGAGCCTGAGGACAAGGTGGAGAGTCGACTCCTTTTGGATATTATAATCA 2688714 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| ||||| || ||| | || | || || ||||| || Sbjct 2688715 GCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGA 2688774 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||||||||| || || ||||| |||| || | || | ||||||||| ||| Sbjct 2688775 GGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCGATCGTGTCGGAACTCTC 2688833 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACC 45349 ||||||||| || | ||||||||||| | |||||| ||||| |||||||| ||| || Sbjct 2688834 GACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACAAAGATTTGCATACCGCCACG 2688893 Query 45350 AA 45351 || Sbjct 2688894 AA 2688895 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || |||||||| || ||||| || |||||||||||||| || || ||||| Sbjct 2688427 ATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCA 2688486 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || ||| | ||||||||||| ||||| || Sbjct 2688487 GCCAAGGTCCTCCCGTCCTCAAGCTGCTTCCCAGCGAAGATCAATCGTTGTTGGTCTGGT 2688546 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| |||||||| | | || | | | || | || | ||||| || ||| Sbjct 2688547 GGGATCCCTTCCTTATCTTGGA-TCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTC 2688605 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || || || || | ||||| ||||| |||||||| Sbjct 2688606 GACCTCCAGGGTTATAGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2688656 >seq9 Length=38630433 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || ||||||||||||||||| ||||| Sbjct 27803265 ATGCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCC 27803206 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | ||| || || ||| | ||||| || || || || || Sbjct 27803205 GCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGA 27803146 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| || || |||| || | || | |||||| || ||| Sbjct 27803145 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTCTC 27803087 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | |||||||||||||| ||||| || || || |||||| Sbjct 27803086 CACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 27803035 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| ||||| | ||| || || || ||||||||||| |||||||| || || Sbjct 27803493 ATGCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCC 27803434 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||||||| || |||||||| Sbjct 27803433 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGA 27803374 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || ||||| | | || | | | || | || | ||||| || || Sbjct 27803373 GGGATGCCCTCCTTGTCTTGGA-TCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTC 27803315 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| ||||| | || ||||||||||| ||||| || || || ||||| ||| || Sbjct 27803314 GACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATGCCGCCAC 27803256 >seq7 Length=21614486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | || ||| | || || ||||| |||||||||||||| ||||| Sbjct 2896003 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2896062 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| ||||| || || |||||| | || || || || Sbjct 2896063 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2896122 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || ||| | || | ||| || ||| ||| Sbjct 2896123 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2896182 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || || |||||||| |||||||||||||| Sbjct 2896183 ACTTCCAAGGTAATTGTCTTTCCAGTGAGAGTTTTCACAAAAATTTGCAT 2896232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | || ||| | || || ||||| |||||||||||||| ||||| Sbjct 2883013 ATTCCACCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCCTTTTGGATATTGTAATCT 2883072 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| ||||| || || |||||| | || || || || Sbjct 2883073 GCAAGCGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGA 2883132 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || ||| | || | ||| || ||| ||| Sbjct 2883133 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 2883192 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || || ||||| || |||||||||||||| Sbjct 2883193 ACTTCCAAGGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 2883242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| |||||| | ||| || ||||| ||||| || || ||||| || Sbjct 2896231 ATGCCACCACGAAGCCGCAACACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCT 2896290 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | |||||||| || | || || | ||||||||||| Sbjct 2896291 GCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCCGGT 2896350 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || ||||| || || | || | ||| || ||| ||| Sbjct 2896351 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCGATGGTATCCGAACTCTCC 2896410 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||||| || || |||||||| ||||| || ||||| Sbjct 2896411 ACCTCCAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 2896460 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | ||| || | |||||| ||||| ||||||||||| ||||| || Sbjct 2895775 ATCCCTCCTCTAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 2895834 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| || | ||||| | || ||||| || Sbjct 2895835 GCAAGTGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGT 2895894 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || |||||||| || || ||||| || | ||||| || ||| Sbjct 2895895 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTCTCC 2895954 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 2895955 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 2896004 >seq1 Length=37323695 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | || || || |||||||||||||||||||| || || ||| | ||| Sbjct 11148450 CAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTTCCATC 11148391 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || || || || | || | | ||||||||| || || || || || ||||| Sbjct 11148390 TTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATC 11148331 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||| || ||| || | || | |||||| ||| ||| || || | || | || Sbjct 11148330 TTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAATGTGATAGT 11148271 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || ||||||||||||||| Sbjct 11148270 CTTTCCGGTAAGAGTCTTCACAAAAATTTGCATC 11148237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||| || || || ||||| ||||||||||| || Sbjct 11147783 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCA 11147724 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | ||| || | ||||| || || | || | | ||||||||| || Sbjct 11147723 GCT-AGGGTTCGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGG 11147665 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || |||| || | || || || ||| Sbjct 11147664 AGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTCTC 11147605 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| ||||| ||||| ||||| ||||||||| Sbjct 11147604 AACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCATC 11147553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000764832760