Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 >seq4 Length=31929104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||| || || || ||||| | || |||||||| | || ||||| | || Sbjct 2302036 TGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCG 2301977 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||| || ||||| || || || || || ||||||||||| ||||| ||||| || Sbjct 2301976 CGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCCACGCAA 2301917 Query 127652 GCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || || | ||| || ||||| |||| | | || || | ||| |||| ||| Sbjct 2301916 GCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC----CGTCGATCCATTTCAACGC 2301861 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| || || || | | ||| || || || | || || | ||||| ||||| Sbjct 2301860 CCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGGAAGAGCCGGTTCTT 2301801 Query 127771 TTCTGATGGA-TCTTTGATGTA 127791 ||| | |||| || |||||||| Sbjct 2301800 TTC-GTTGGAGTCCTTGATGTA 2301780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503894729960