Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq2 114 1e-20 seq5 113 5e-20 seq7 111 2e-19 seq1 109 6e-19 >seq9 Length=38630433 Score = 125 bits (138), Expect = 8e-24 Identities = 147/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| | || ||||| |||| |||||||||||||| ||||| Sbjct 27803454 TCCTTCTGGATATTGTAGTCCGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 27803395 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 27803394 ATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT-AACGTT 27803336 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| ||| || || | |||||||| ||||| || || ||||| Sbjct 27803335 GTCGATCGTGTCAGAGCT---TTCGACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTT 27803279 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 27803278 GACGAAGATCTGCAT 27803264 Score = 123 bits (136), Expect = 3e-23 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| || | || || || |||| || || |||||||||||||| Sbjct 27803226 TCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAG 27803167 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||| || || | || | || |||||||| |||||| ||||| ||| Sbjct 27803166 ATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 27803108 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| ||||| || | |||||||||||||| || || ||||| Sbjct 27803107 GTCGATGGTGTCTGAGCTC---TCCACCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTT 27803051 Query 46579 AACAAAGATTTGCATTTTGCAC 46600 || ||||| ||||| ||| || Sbjct 27803050 CACGAAGATCTGCATCTTGTAC 27803029 >seq2 Length=41236440 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| || || || ||||||| ||| || || |||| || Sbjct 32406500 ACCAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCTAGGGTACGGCCGTCTTCA 32406559 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| || | || || ||||| | || | || |||||||| | Sbjct 32406560 AGCTGCTTGCCGGCGAAGATGAGACGTTGTTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 32406619 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | |||||| ||||| || |||| || ||||| || Sbjct 32406620 ATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTT 32406678 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || ||||| || ||||| ||||| Sbjct 32406679 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 32406708 >seq5 Length=39371879 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| || || | | ||| || |||| || ||||| || |||||||| Sbjct 2688693 CTCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2688752 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | || || |||||| ||| || ||||| ||| Sbjct 2688753 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGA-CGT 2688811 Query 46522 CG-CCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||||| ||| || || || | |||||||||||||| |||| |||| Sbjct 2688812 TGTCGATCGTGTCGGAACTC---TCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTT 2688868 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||||||||| Sbjct 2688869 TGACAAAGATTTGCAT 2688884 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || || || | | || || |||| |||||||| || |||||||| Sbjct 2688921 CTCCTTCTGGATGTTATAATCCGCCAAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAA 2688980 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||||||| || | | |||||||| |||||| ||||| ||| Sbjct 2688981 GATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 2689039 Query 46522 CGCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||||| ||| ||||| || | ||||||||||| || |||| |||| Sbjct 2689040 TGTCGATCGTGTCGGAACTC---TCCACTTCGAGGGTGATGGTTTTACCGGTCAAGGTTT 2689096 Query 46578 TAACAAAGATTTGCAT 46593 | || ||||| ||||| Sbjct 2689097 TGACGAAGATCTGCAT 2689112 >seq7 Length=21614486 Score = 111 bits (122), Expect = 2e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||||| |||| ||||| || |||||||||||| || ||||| | Sbjct 2882788 CCTCCTCTCAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCA 2882847 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | | || || |||||||| || || || ||||| | ||| ||||| | || Sbjct 2882848 AGTGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGG 2882907 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | |||||| || |||||| ||| | ||| | | | ||||| |||| || Sbjct 2882908 ATACCCTCCTTATCTTGGATCTT-GGCTTTAACGTTGTCAATTGTGTCAGAGCTC---TC 2882963 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| |||| ||||||||||| || |||| ||||| ||||| || |||||| Sbjct 2882964 CACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2883015 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||||| |||| ||||| || |||||||||||| || ||||| | Sbjct 2895778 CCTCCTCTAAGGCGCAAGACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCA 2895837 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | | || || |||||||| || || || ||||| | ||| ||||| | || Sbjct 2895838 AGTGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGTTGGTCAGGTGGG 2895897 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||| || |||||| |||| | | | ||||| |||| ||| Sbjct 2895898 ATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGCTC---TCC 2895954 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||||||||| || |||| ||||| ||||| || |||||| Sbjct 2895955 ACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 2896005 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | |||||||| | || || | ||||||||| || || Sbjct 2882595 CTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 2882654 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| ||||| | ||| | | Sbjct 2882655 GATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTT-TGCTTTCACAT 2882713 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | |||||| |||| || || |||| ||||||||||| || |||| || | Sbjct 2882714 TGTCAATCGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCT 2882770 Query 46578 TAACAAAGATTTGCAT 46593 | ||||| || ||||| Sbjct 2882771 TCACAAATATCTGCAT 2882786 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | |||||||| | || || | |||||| || || || Sbjct 2895585 CTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTACCAGCAAA 2895644 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| ||||| | ||| | | Sbjct 2895645 GATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTT-TGCTTTCACAT 2895703 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| ||||||||||| || |||| || | Sbjct 2895704 TGTCAATTGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCCAGTCAATGTCT 2895760 Query 46578 TAACAAAGATTTGCAT 46593 | ||||| || ||||| Sbjct 2895761 TGACAAATATCTGCAT 2895776 >seq1 Length=37323695 Score = 109 bits (120), Expect = 6e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 32435724 TCCTTCTGAATATTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 32435783 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || ||||| || | || | | ||||||||| |||||| |||| | Sbjct 32435784 ATGAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTG 32435843 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| ||||| || || | || ||||| || ||||| || ||||| || Sbjct 32435844 TCGATGGTGTCAGAGGATTCGACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACG 32435903 Query 46583 AAGATTTGCAT-TTTGC 46598 ||||| ||||| ||||| Sbjct 32435904 AAGATCTGCATCTTTGC 32435920 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | || |||||| |||||||| ||||| | ||| || || | Sbjct 11147769 ACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTTCGACC 11147710 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| ||||| || || || | | |||||||| | || | | ||||| Sbjct 11147709 ATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTT 11147650 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| |||||| ||||| | | | || || |||| || || || | || Sbjct 11147649 GTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCAGAGCTC---TCAACCTCAAGGGT 11147593 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||||| || || ||||| |||||||||||||| Sbjct 11147592 GATGGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCAT 11147554 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||||||||||| || | ||| |||||||||||||| ||||| | Sbjct 11148464 CCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCG 11148405 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || ||||||||||| || || || | | |||||||| | || Sbjct 11148404 AGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGG 11148345 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||| || |||||| ||| | | | | ||||| ||| || Sbjct 11148344 ATACCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTC---TCA 11148288 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || || || || || || || ||||| |||||||| Sbjct 11148287 ACCTCCAATGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTTGCAT 11148238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235354778120