Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq9 91.5 1e-13 seq5 82.4 5e-11 >seq6 Length=26303135 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| |||| | | | |||| |||||||| ||||| |||| Sbjct 25054523 TCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAT 25054464 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | |||||||| | || | ||||| ||||| || ||| |||| | Sbjct 25054463 ATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTA 25054404 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| ||||| ||||||||||| ||||| || || | ||| || ||| Sbjct 25054403 TCAATGGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTAACG 25054344 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 25054343 AAAATCTGCAT 25054333 >seq9 Length=38630433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | ||| ||||||| || | ||| ||| ||||| ||||| ||||| || Sbjct 27803263 GCCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGC 27803204 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || | || || | ||| || ||| | || || || ||||| ||||| | || Sbjct 27803203 AAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGG 27803144 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || || | ||| | | | ||||||| ||| |||| Sbjct 27803143 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTCTCCA 27803085 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| || |||| ||||| |||||||||||||| Sbjct 27803084 CCTCGAGGGTGATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 27803036 >seq5 Length=39371879 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||| |||||| || | || |||| ||||||||| | || Sbjct 2688694 TCCTTTTGGATATTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAG 2688753 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||| || || | || | |||||||||||| ||||| || | ||| Sbjct 2688754 ATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATTTTGGCCTTGA-CGTT 2688812 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | || || || || | || || ||||| || || |||||||| || Sbjct 2688813 GTCGATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGAC 2688872 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 2688873 AAAGATTTGCAT 2688884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367775332623