Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 161 1e-34 seq4 96.9 4e-15 >seq2 Length=41236440 Score = 161 bits (178), Expect = 1e-34 Identities = 294/423 (70%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 |||||| ||||| | || || ||||| || || |||| |||||||| |||| || Sbjct 18386875 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGT---GTTACCCTC 18386819 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| || |||||||||||||||| ||| || |||| |||||| ||| | Sbjct 18386818 AAAACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTCTGCTCCCTTTCATCGTTCCCACC 18386759 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||||| | | |||| ||| || |||||||| ||||| | ||||| || || Sbjct 18386758 ACCAATACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACA 18386699 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||| || | | | |||| |||||||| || || || |||||| |||||| Sbjct 18386698 GGGGGCATTCTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAGGCGCCAACACCA 18386641 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 |||||||| || ||||| | | | ||| || | || ||| || ||| || |||||| Sbjct 18386640 ACAAACATTTCAACAAACTCAGAACCTGAA-ATGGAGAAGAATGGCACACCAGCTTCACC 18386582 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| ||||||||||| || || || || || | || || |||| Sbjct 18386581 AGCAATTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGGAGGGCCAACAAGAAGAACACC 18386522 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || || || ||| | || ||||||| || | ||| || || ||||||| Sbjct 18386521 TTTAGGGATGCGAGCCCCAACTGCAGTAAATCTCTCTGGCTTCTTTAGGAACTCCACAAC 18386462 Query 16331 CTC 16333 ||| Sbjct 18386461 CTC 18386459 >seq4 Length=31929104 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 || ||||| | |||||| | ||| || ||||||| || ||| | |||||||| || Sbjct 2301798 GAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCGTGTGTGGCTAAGAAAGCCGAG 2301857 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 102197 ||||| |||| ||| | || ||| | || || || || || |||| ||| Sbjct 2301858 TGGGCGTTGAAATGGATCGACGGT---TCGGAAACTTTCGCCGAACGGCTAATCGCTTTT 2301914 Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || || || || || || ||||||||||| ||||||||||| | |||| | || ||| Sbjct 2301915 GCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCTATATTTTGGTTAAAAAAG 2301974 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 102317 || || | ||||| || | ||||| |||||| | ||||| || || || || ||| Sbjct 2301975 CGCGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATCTCACGAGATGAAGGTCTC 2302034 Query 102318 CA 102319 || Sbjct 2302035 CA 2302036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739055750320