Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 >seq4 Length=31929104 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| || |||||||| || ||||| | ||| || ||| | ||||||||| | || Sbjct 2302037 ATGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCC 2301978 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | || |||| |||||| || || || ||||||||||| ||||| || || ||||| || Sbjct 2301977 GCGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCCACGCA 2301918 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || ||||||| ||| || || || |||| | || ||||| ||| || | ||||| Sbjct 2301917 AGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGTCGATCCATTTCAACGCCCA 2301858 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 | ||| || | | || || || |||| || ||| | ||| || | |||||||| Sbjct 2301857 CTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGGAAGAGCCGGTTCTTTTC 2301798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972826891800