Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 167 3e-36 seq4 105 8e-18 seq1 105 8e-18 >seq2 Length=41236440 Score = 167 bits (184), Expect = 3e-36 Identities = 239/334 (72%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| ||||| | || || || || || || |||| |||||||| | | ||||| Sbjct 18386875 ATCAAGAATATCTGCCCGGTTAGTTGCTGCTATTACAATGATACCTGTGTTACCCTCAAA 18386816 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || |||||||| ||||||| ||| || |||| |||||| ||| | Sbjct 18386815 ACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTCTGCTCCCTTTCATCGTTCCCACCACC 18386756 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||||| | | |||| ||| || |||||||| ||||| | ||||||||||| || Sbjct 18386755 AATACCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCCACAAAGACAATACAGGG 18386696 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 ||| || ||| | | |||||||| ||||| | |||||| ||||||||||| Sbjct 18386695 GGCATTCTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAGGCGCCAACACCAACAAA 18386636 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522 ||| || ||||| | | | ||| || | || ||| || ||| || |||||| |||| Sbjct 18386635 CATTTCAACAAACTCAGAACCTGAA-ATGGAGAAGAATGGCACACCAGCTTCACCAGCAA 18386577 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || ||| ||||||||||| || || || || Sbjct 18386576 TTGCCTTGGCCAGAAGAGTCTTTCCAGTTCCAGG 18386543 >seq4 Length=31929104 Score = 105 bits (116), Expect = 8e-18 Identities = 189/271 (70%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 |||||||| |||||||| || || | || || ||||| || || ||||| | || Sbjct 2302036 TGGAGACCTTCATCTCGTGAGATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCG 2301977 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 ||||| || |||||| | ||||||||||| || |||||||| || || ||||| || Sbjct 2301976 CGCTTTTTTAACCAAAATATAGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCCACGCAA 2301917 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATTG 117463 ||||| || | || || |||||||| | ||| || ||| | |||||||| | Sbjct 2301916 GCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGA-AC----CGTCGATCCATTTCAACG 2301862 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 117523 |||| | || ||||| | | ||| || || |||| || ||| | || | | | |||| Sbjct 2301861 CCCACTCGGCTTTCTTAGCCACACACGGCACTGTTTCGACGGCGTGGAAGAGCCGGTTCT 2301802 Query 117524 TTTCAGATCCA-TCCTTAATGTATTTGTCAA 117553 |||| | | | ||||| ||||| | |||| Sbjct 2301801 TTTC-GTTGGAGTCCTTGATGTAAGTTTCAA 2301772 >seq1 Length=37323695 Score = 105 bits (116), Expect = 8e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| ||||||||||| || ||||| | || ||| ||||| | ||| Sbjct 6395410 TGAGGCCTTGGTGTTCCAGCATTGAAAAGTGTTGGAGAAGCATGAGTGAACCATCTTTGA 6395469 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| ||| || || || | || Sbjct 6395470 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCA 6395529 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| ||| || |||| || | | || | || | || |||| | Sbjct 6395530 ACCCTCATTAACATGTGTTGAGGCCTTTCTAT-AACCTTCCCTTGA-ACTTTCAAGAGGT 6395587 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||| | ||||||||| || | ||| ||||||| Sbjct 6395588 AGGACCTCTCAAGGGTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCG 6395636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977621478440