Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq431 632 2e-176 >seq431 Length=160619 Score = 632 bits (700), Expect = 2e-176 Identities = 740/997 (74%), Gaps = 2/997 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | ||||| || || |||| ||||| Sbjct 1573 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTT 1514 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| || || | |||||||| Sbjct 1513 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCAT 1455 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 1454 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1395 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 || ||||| || || |||||||| || ||||| |||| || || ||| | ||||| Sbjct 1394 CGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTT 1335 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || ||||||||||| ||||| |||| || ||| | || || || ||||||| | Sbjct 1334 TTACCCGATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1275 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | ||||||||||||||||||||||| Sbjct 1274 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1215 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGC 180157 | || || ||||||||||||| |||||| || |||||||| ||||| || || || Sbjct 1214 TAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGC 1155 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || | ||||| ||| | ||||||| |||||||||| || ||||| | ||||| Sbjct 1154 TGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCC 1095 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 || || || ||||| || ||||||| |||| |||| ||||| || || ||||||||||| Sbjct 1094 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCT 1035 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| || |||||| | || ||||| ||||| |||||||| || || ||| || Sbjct 1034 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 975 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| |||| |||||| || | | |||||||| |||| ||| || Sbjct 974 TATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 915 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 || | ||||||| || |||||||| ||||| || || || ||||| ||||| ||||| Sbjct 914 TAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGG 855 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 || || || || |||||||||| ||||| |||||||| || ||||| | ||||| Sbjct 854 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTT 795 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||||| || || |||||||| || || ||||||||||| || | || | ||||| || Sbjct 794 CTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTAT 735 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 ||| |||||||| || |||||||| |||||||| || | ||||| ||||||||||||| Sbjct 734 GGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT 675 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 | || || ||||| || | | ||||| ||| || ||||||||||||||||| || Sbjct 674 AATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 615 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 ||||||||||| |||||||| || ||||| || ||| Sbjct 614 ACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 581 bits (644), Expect = 4e-161 Identities = 741/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| | || || || || ||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || || ||||| || || |||||||| |||||| | || || ||| |||||| | Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGC-AATTTCTT 34931 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || |||||| | | | | |||||| | | |||| ||||| Sbjct 34932 AACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGG 34991 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||||||||| || || ||||| || ||| ||| | || || || ||| | ||||| Sbjct 34992 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGT 35051 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || |||||||| || |||| || || ||||||||| | | |||||||||||||| || Sbjct 35052 TGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCG 35111 Query 181783 -TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCG 181841 ||| || | | ||||| || ||||| || || || || ||||| |||||||| || | Sbjct 35112 ATCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 35170 Query 181842 TCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCG 181901 | |||||||| || || ||||| || || ||||| |||||||||||||||| ||||| | Sbjct 35171 TTTCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTG 35230 Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 |||| || || || || || ||| | ||||| |||| || |||||||||||||| | | Sbjct 35231 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGA 35290 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTC 182021 | || || ||||||||||| ||||| ||| | |||| | || | || | || |||| Sbjct 35291 ACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTC 35350 Query 182022 ACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAG 182081 | |||| |||||||| |||||| | | | |||| ||||| |||||||| ||| | Sbjct 35351 ATGGTGCTACCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 35410 Query 182082 CATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGT 182141 | || | ||||||||| |||||||| ||||||||||| || || |||||||| |||| Sbjct 35411 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 35470 Query 182142 CTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 182201 | || ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||| Sbjct 35471 CCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 35530 Query 182202 TTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 182261 | || || | ||| | |||| ||| | | || | | ||||| ||||| ||||| | Sbjct 35531 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 35590 Query 182262 GTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGT 182321 |||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| | Sbjct 35591 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 35650 Query 182322 TCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATC 182381 ||||||| || || ||||| || || || ||| | ||||| ||| | || | |||| Sbjct 35651 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATC 35710 Query 182382 AACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | || ||||| ||| || | ||||||||||| || ||||| | || ||||| || Sbjct 35711 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||||||||||||||||| ||||| | || ||||||| | |||||||||||||| ||| Sbjct 114569 TTCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 114510 Query 141314 CCTACCTGGGGAG 141326 ||||| || |||| Sbjct 114509 CCTACTTGAGGAG 114497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||||||||||||||||| ||||| | || ||||||| | |||||||||||||| ||| Sbjct 135384 TTCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 135443 Query 141314 CCTACCTGGGGAG 141326 ||||| || |||| Sbjct 135444 CCTACTTGAGGAG 135456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610393511487240