Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq431 529 2e-145 seq9 98.7 1e-15 >seq431 Length=160619 Score = 529 bits (586), Expect = 2e-145 Identities = 684/942 (73%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || |||||||||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 1522 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 1464 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 ||| |||||||| || ||||| || ||||| || || || | ||||| || | || || Sbjct 1463 TGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 1404 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 | | | || || ||||| || || |||||||| || |||| | || ||||| || Sbjct 1403 TCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGG 1344 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | ||||| ||||| ||||||||||| ||| |||||||||||||||| || ||||| || Sbjct 1343 TTTGCACTTTTACCCGATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGG 1284 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | |||||| | ||||| | | |||||||| | | Sbjct 1283 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 1224 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || ||||| ||||||||| ||||||||| || || || Sbjct 1223 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCC 1164 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| |||||| ||||| | || ||| | ||||| || || ||||| Sbjct 1163 TGTTGCAGCTGCTGCCGCTGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGA 1104 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| ||||| ||||| |||||||||||||| ||| | || ||||| || || || Sbjct 1103 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACA 1044 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || ||||| || || |||||| ||| ||||| || | ||||| || || | Sbjct 1043 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCT 984 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||||||||| | || || || | | ||||| ||||| ||||| | Sbjct 983 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 924 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| | ||||| ||||| |||||||| || || || ||||| Sbjct 923 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 864 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 863 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 804 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | |||||||||||||||| | || ||||| || || | ||||| ||| || | ||||| Sbjct 803 TTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTAT 744 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAA 170282 |||| ||||| |||||| | ||||||||||| || |||||||| || |||||| | | Sbjct 743 TAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 684 Query 170283 CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGT 170342 || | | || |||| |||| || | ||| | || ||| | ||||||||||| Sbjct 683 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 624 Query 170343 TATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||| | ||||| || |||||||| ||||||||||| Sbjct 623 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 582 Score = 372 bits (412), Expect = 4e-98 Identities = 704/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| || || ||||| || || |||| ||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||| || ||||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || ||| || Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCTTA 34932 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 34933 ACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 34992 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | |||| ||||| Sbjct 34993 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTTGTT 35052 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || ||||| |||||||| ||| | | |||||||| | || || Sbjct 35053 GCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCGCGA 35112 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 35113 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 35172 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || ||||| |||||||||||||| |||||||||| || || || ||| Sbjct 35173 TCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 35232 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || ||||| || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 35233 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTGAAC 35292 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| ||||| || || | || | || | |||| || |||||| Sbjct 35293 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCAT 35352 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || ||| | || || || | ||||| || |||| | Sbjct 35353 GGTGCTACCGTGGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 35395 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 35396 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 35451 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 35452 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 35511 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 35512 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 35571 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 ||||| || || ||||| | || || || || || || || || || | ||||| ||| Sbjct 35572 GGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 35631 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || |||||||||||||| || ||||| ||| | || || ||||| | || Sbjct 35632 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 35691 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || |||| Sbjct 35692 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 35751 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 35752 CGTGGAAACGCTCTTTAA 35769 >seq9 Length=38630433 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| | || ||||| ||||| ||||||||||||||||| || || || | Sbjct 2730251 CAGAGGTTTGGGGTGCCGATGGGGTATGGTGGTCCTCATGCTGCATTTTTGGCTACTTCC 2730192 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTC--AGTCAGTAGATAGTGAAG 153885 | |||||||||| ||| || || ||||| | ||| ||| || ||| | || Sbjct 2730191 CAAGAGTATAAGAGGTTGATGCCAGGGCGAATTATCGGTGTTAGT--GTTGATTCTTCAG 2730134 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || || | | | ||| | || || || ||||| ||||| | || ||||||| Sbjct 2730133 GGAAGCCTGCTTTGCGTATGGCAATGCAAACCAGGGAGCAACATATTCGCAGGGACAAAG 2730074 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || |||||||||||||||||||| Sbjct 2730073 CTACTAGTAACATCTGCACAGCTCA 2730049 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || ||||| || |||||||| | || ||||||||||| ||||||||||||||||| Sbjct 2727606 TGGAGCTGATGTTTGCCATCTAAATCTCCACAAAACATTCTGCATTCCACATGGAGGTGG 2727547 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 || |||||| | || ||||| ||||| || ||| | |||||||| Sbjct 2727546 TGGACCTGGCATGGGACCTATTGGTGTCAAGAAGCATTTGGCACCATTT 2727498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579209679491040