Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theobroma_20cacao_20[refseq_20GCF_5F000208745.1_202016-07-09] 431 sequences; 324,879,930 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq431 612 2e-170 >seq431 Length=160619 Score = 612 bits (678), Expect = 2e-170 Identities = 730/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || |||| ||||| || || || Sbjct 1564 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 1505 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | |||||| ||||| || || | |||||| | |||||||| Sbjct 1504 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 1446 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1445 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 1386 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || |||||||| || | ||| ||||| ||||| || | ||||| || || || Sbjct 1385 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1326 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 ||||||||| ||||| | ||||| ||||| || || || ||||||| | ||| | || Sbjct 1325 CTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1266 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | |||||||| ||||| ||||||||| | || Sbjct 1265 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1206 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | |||||||| || |||||| ||||||||| || || || || || || || || Sbjct 1205 TCTGGGTATGCGCCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTGCCGC 1146 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | ||||| |||||||||| ||||| ||||||| ||||| || ||||| Sbjct 1145 TGTTTTCTTGATCTATCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1086 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || ||||||| |||| | || ||||| ||||| ||||| || || ||||| || Sbjct 1085 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAACACAACATCCTTATGCACCC 1026 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 || || ||| | ||||| ||||| ||||| || ||| | || ||||||||||| || Sbjct 1025 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 966 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 ||||| || ||| | | | || || || || |||| ||||| || | || Sbjct 965 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 906 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| ||||| ||||| |||||||| || || |||||||| ||||||||||| || || Sbjct 905 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 846 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || |||||||||||||| ||| |||||||| || || || || ||||||||||| || Sbjct 845 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGC 786 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 ||| |||||||| || || |||||||||||||| | || | ||| ||||| ||||| Sbjct 785 TGCTTGGCCTGTAGTGGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAA 726 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 ||| || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 725 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 666 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 |||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| || Sbjct 665 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 606 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCT 168849 || |||||||| || || || |||||| Sbjct 605 TCATAACTTCCCTCTAGACCTAGCTGCT 578 Score = 531 bits (588), Expect = 6e-146 Identities = 728/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | |||||||| || Sbjct 34753 TTTGATATTATGGATGACTGGTTACGTAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGC 34812 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| | || |||||| | ||| Sbjct 34813 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTTACAGGTACAACCTTT 34872 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || ||||| ||||| || || ||| | || ||||| || | |||||| || ||| Sbjct 34873 GTAACTTCATGGTATACTCATGGATTGGC---CAGTTCCTATTTGGAAGGCTGCAATTTC 34929 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || ||| |||||| | | | | ||| || || | || |||||| Sbjct 34930 TTAACCGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTATGG 34989 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| || ||||| |||| ||| Sbjct 34990 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACATTT 35049 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || || || || | | | || ||||| ||| | | || |||||| | || Sbjct 35050 GTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCG 35109 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 35110 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 35169 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || ||||| || || || ||||||||||| ||| ||| Sbjct 35170 GTTTCTGTATTCCTGATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTT 35229 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | || | |||||||| || || ||||| ||| Sbjct 35230 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGATTTCATAATTGGACATTG 35289 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | ||||||| || |||| | ||||| Sbjct 35290 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATT 35349 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||||| ||| || || || || || | |||||| ||||| |||||||| ||| Sbjct 35350 CATGGTGCTACCGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 35409 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 35410 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 35469 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 35470 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 35529 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| || |||| | | || || ||||| || || Sbjct 35530 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTA 35589 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 ||||| || || ||||| ||||| ||| | ||||| |||||||| ||||||||||| Sbjct 35590 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 35649 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||||||||| || || || || || || ||||||| ||| |||| || ||| Sbjct 35650 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGAT 35709 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 35710 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574470505023480